Bioconductor LFC

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1.2k

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deseq2 LFC LRT

written 4.8 years ago by sally.badawi • 0

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616

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GLM prior DESeq LFC

updated 17 months ago by Michael Love 41k • written 17 months ago by stew • 0

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910

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RNAseq LFC DEseq

2.5 years ago ayy2110 • 0

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1.2k

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deseq2 lfc betaprior

updated 13 months ago by Michael Love 41k • written 5.0 years ago by Mariaxi • 0

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12k

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deseq2 lfc coef contrast

updated 6.3 years ago by Michael Love 41k • written 6.3 years ago by Anke Busch ▴ 10

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2.4k

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limma microarray DEGs p values lfc

6.4 years ago rkp • 0

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16k

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deseq2 deseq lfc lfcse standard error

updated 6.7 years ago by rraadd_8 • 0 • written 6.7 years ago by tootiki • 0

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1.9k

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microarray limma multiple treatments lfc

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by brionyk9 • 0

8 results • Page 1 of 1

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20

Thank you for the explanation and contacting the DSS package authors.

Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k