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LFC
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0
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7
replies
1.2k
views
LRT test followed by filtering based on LFC
deseq2
LFC
LRT
written 4.8 years ago by
sally.badawi
• 0
1
vote
1
reply
616
views
Gene wise dispersion estimate Process - From the prior to the posterior
GLM
prior
DESeq
LFC
updated 17 months ago by
Michael Love
41k • written 17 months ago by
stew
• 0
0
votes
1
reply
910
views
Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
2.5 years ago
ayy2110
• 0
0
votes
6
replies
1.2k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 13 months ago by
Michael Love
41k • written 5.0 years ago by
Mariaxi
• 0
16
votes
7
replies
12k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
Anke Busch
▴ 10
6
votes
4
replies
2.4k
views
Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
6.4 years ago
rkp
• 0
4
votes
14
replies
16k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 6.7 years ago by
rraadd_8
• 0 • written 6.7 years ago by
tootiki
• 0
2
votes
1
reply
1.9k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
brionyk9
• 0
8 results • Page
1 of 1
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Replies
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Daniel E. Weeks
▴ 20
Thank you for the explanation and contacting the DSS package authors.
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
shepherl
3.6k
The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…
Answer: GOslim missing GO term
by
James W. MacDonald
64k
I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…
Answer: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient
by
James W. MacDonald
64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Votes
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
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