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LFC
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244
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Filtering DESeq2 results for | LFC | > 1 genes
RNAseq
LFC
DEseq
11 months ago
ayy2110
• 0
0
votes
5
replies
473
views
LRT test followed by filtering based on LFC
deseq2
LFC
LRT
updated 7 weeks ago by
Michael Love
36k • written 3.3 years ago by
sally.badawi
• 0
0
votes
2
replies
440
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 3.5 years ago by
Michael Love
36k • written 3.5 years ago by
Mariaxi
• 0
12
votes
7
replies
8.5k
views
DESeq2 lfcShrink() usage of coef vs. usage of contrast
deseq2
lfc
coef
contrast
updated 4.8 years ago by
Michael Love
36k • written 4.8 years ago by
Anke Busch
▴ 10
6
votes
4
replies
1.6k
views
Identification of DEGs through limma analysis
limma
microarray
DEGs
p values
lfc
4.9 years ago
rkp
• 0
4
votes
14
replies
9.9k
views
standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 5.1 years ago by
rraadd_8
• 0 • written 5.2 years ago by
tootiki
• 0
2
votes
1
reply
1.2k
views
Using Limma to identify any differences between multiple treatment groups (without making pairwise comparisons)
microarray
limma
multiple treatments
lfc
updated 6.0 years ago by
Aaron Lun
★ 27k • written 6.0 years ago by
brionyk9
• 0
7 results • Page
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Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
We have progressed past the point where I show you how to do things using Bioconductor packages, and into the realm where I start telling y…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! As your mentioned here, 12-15 means cutoff value about 4? Could I select the reflection point as the "point" that starts to ha…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
James W. MacDonald
59k
It's a non-scientific selection. The Nonspecific probes are meant to be sequences that are not found in nature, so any binding is due to cr…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks for your excellent reply sir! But there are still some points confused me. (1).dbGetQuery get 93 kinds of probes. Would be okay for …
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
by
Kevin Blighe
3.5k
Great! problem solved, then?
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Comment: Quantile Normalization after rma or not?
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: How to best visualize multi-level transcriptomics experiment data?
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