Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MAplot
•
reset
0
votes
2
replies
951
views
Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 14 months ago by
ATpoint
★ 4.0k • written 14 months ago by
Michael
• 0
10
votes
8
replies
2.1k
views
MA plot
MAplot
15 months ago
Nathalie
▴ 20
0
votes
3
replies
2.2k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
sp
• 0
1
vote
1
reply
771
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.7 years ago by
Michael Love
41k • written 3.7 years ago by
evelas13
• 0
1
vote
2
replies
586
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
rbronste
▴ 60
2
votes
2
replies
2.5k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 4.9 years ago by
Rory Stark
★ 5.2k • written 4.9 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.4 years ago
avitalwasser
• 0
5
votes
8
replies
1.2k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
rbronste
▴ 60
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
ma619
• 0
0
votes
1
reply
1.5k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
phurbusang
• 0
2
votes
1
reply
2.0k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
rbronste
▴ 60
2
votes
4
replies
1.6k
views
DiffBind MA plot
diffbind
maplot
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
grundelphine
• 0
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.6 years ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
rbronste
▴ 60
0
votes
3
replies
2.7k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.6 years ago by
Michael Love
41k • written 6.6 years ago by
jshouse
▴ 10
3
votes
6
replies
1.8k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.0 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards
• All
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Locations
• All
United States,
7 minutes ago
France,
12 minutes ago
Belgium,
12 minutes ago
United Kingdom,
14 minutes ago
Ireland,
19 minutes ago
Traffic: 997 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6