Bioconductor MEDIP-seq

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530

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R medip-seq MEDIPS

14 months ago Luomeng • 0

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1.6k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

2.9 years ago rtrivedi1 ▴ 10

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1.3k

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MEDIPS MeDIP-seq

updated 2.6 years ago by Lukas ▴ 20 • written 4.4 years ago by lshepard ▴ 40

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761

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medip-seq createset

updated 5.3 years ago by Bioconductor Community 0 • written 5.4 years ago by oussama.badad • 0

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962

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medips medip-seq dna methylation dmr analysis

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by mtefit • 0

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811

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medip-seq methylation CpGs

5.5 years ago saripalligautam86 ▴ 10

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1.9k

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medips bsgenome medip-seq

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by vjain • 0

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6.5k

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diffbind medip-seq edger deseq2

updated 6.5 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by florian.noack ▴ 60

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1.9k

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R medips medip-seq

7.7 years ago • updated 6.9 years ago stb • 0

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1.6k

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medips medip-seq error lukas

updated 7.0 years ago by Matthias Lienhard ▴ 240 • written 7.0 years ago by anupriyaverma1408 • 0

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1.2k

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medips medip-seq peak finding luckas

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.0 years ago by anupriyaverma1408 • 0

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1.1k

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medips R medip-seq pair-end reads

updated 7.4 years ago by Lukas Chavez ▴ 570 • written 7.4 years ago by stb • 0

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1.1k

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medips medip-seq R pair-end reads

updated 7.6 years ago by Lukas Chavez ▴ 570 • written 7.6 years ago by stb • 0

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1.5k

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R medip-seq medips bwa

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by stb • 0

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1.3k

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annotation chippeakanno rattus norvegicus medip-seq

8.2 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0