Bioconductor MeDIP-seq

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712

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R medip-seq MEDIPS

22 months ago Luomeng • 0

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2.0k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

3.6 years ago rtrivedi1 ▴ 10

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1.6k

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MEDIPS MeDIP-seq

updated 3.2 years ago by Lukas ▴ 20 • written 5.1 years ago by lshepard ▴ 40

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888

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medip-seq createset

updated 6.0 years ago by Bioconductor Community 0 • written 6.1 years ago by oussama.badad • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.1 years ago by Lukas Chavez ▴ 570 • written 6.1 years ago by mtefit • 0

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962

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medip-seq methylation CpGs

6.1 years ago saripalligautam86 ▴ 10

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2.2k

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medips bsgenome medip-seq

updated 6.8 years ago by Lukas Chavez ▴ 570 • written 6.8 years ago by vjain • 0

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7.8k

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diffbind medip-seq edger deseq2

updated 3 months ago by khanwaled68 • 0 • written 8.8 years ago by florian.noack ▴ 60

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2.2k

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R medips medip-seq

8.4 years ago • updated 7.5 years ago stb • 0

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1.9k

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medips medip-seq error lukas

updated 7.6 years ago by Matthias Lienhard ▴ 280 • written 7.6 years ago by anupriyaverma1408 • 0

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1.4k

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medips medip-seq peak finding luckas

updated 7.6 years ago by Lukas Chavez ▴ 570 • written 7.6 years ago by anupriyaverma1408 • 0

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1.3k

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medips R medip-seq pair-end reads

updated 8.1 years ago by Lukas Chavez ▴ 570 • written 8.1 years ago by stb • 0

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1.2k

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medips medip-seq R pair-end reads

updated 8.3 years ago by Lukas Chavez ▴ 570 • written 8.3 years ago by stb • 0

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1.7k

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R medip-seq medips bwa

updated 8.4 years ago by Lukas Chavez ▴ 570 • written 8.4 years ago by stb • 0

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1.5k

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annotation chippeakanno rattus norvegicus medip-seq

8.8 years ago Vang Le ▴ 80

15 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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