Bioconductor MeDIP-seq

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862

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R medip-seq MEDIPS

2.6 years ago Luomeng • 0

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2.4k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

4.3 years ago rtrivedi1 ▴ 10

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1.8k

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MEDIPS MeDIP-seq

updated 3.9 years ago by Lukas ▴ 20 • written 5.8 years ago by lshepard ▴ 40

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995

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medip-seq createset

updated 6.6 years ago by Bioconductor Community 0 • written 6.8 years ago by oussama.badad • 0

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1.3k

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medips medip-seq dna methylation dmr analysis

updated 6.8 years ago by Lukas Chavez ▴ 570 • written 6.8 years ago by mtefit • 0

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1.1k

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medip-seq methylation CpGs

6.8 years ago saripalligautam86 ▴ 10

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2.6k

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medips bsgenome medip-seq

updated 7.5 years ago by Lukas Chavez ▴ 570 • written 7.5 years ago by vjain • 0

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9.0k

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diffbind medip-seq edger deseq2

updated 12 months ago by khanwaled68 • 0 • written 9.5 years ago by florian.noack ▴ 60

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2.4k

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R medips medip-seq

9.1 years ago • updated 8.2 years ago stb • 0

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2.1k

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medips medip-seq error lukas

updated 8.3 years ago by Matthias Lienhard ▴ 280 • written 8.3 years ago by anupriyaverma1408 • 0

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1.5k

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medips medip-seq peak finding luckas

updated 8.3 years ago by Lukas Chavez ▴ 570 • written 8.3 years ago by anupriyaverma1408 • 0

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1.5k

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medips R medip-seq pair-end reads

updated 8.7 years ago by Lukas Chavez ▴ 570 • written 8.8 years ago by stb • 0

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1.4k

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medips medip-seq R pair-end reads

updated 9.0 years ago by Lukas Chavez ▴ 570 • written 9.0 years ago by stb • 0

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1.9k

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R medip-seq medips bwa

updated 9.1 years ago by Lukas Chavez ▴ 570 • written 9.1 years ago by stb • 0

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1.6k

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annotation chippeakanno rattus norvegicus medip-seq

9.5 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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