Bioconductor MeDIP-seq

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914

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R medip-seq MEDIPS

2.8 years ago Luomeng • 0

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2.6k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

4.5 years ago rtrivedi1 ▴ 10

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2.0k

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MEDIPS MeDIP-seq

updated 4.2 years ago by Lukas ▴ 20 • written 6.0 years ago by lshepard ▴ 40

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1.0k

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medip-seq createset

updated 6.9 years ago by Bioconductor Community 0 • written 7.0 years ago by oussama.badad • 0

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1.4k

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medips medip-seq dna methylation dmr analysis

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.0 years ago by mtefit • 0

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1.1k

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medip-seq methylation CpGs

7.0 years ago saripalligautam86 ▴ 10

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2.7k

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medips bsgenome medip-seq

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by vjain • 0

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9.3k

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diffbind medip-seq edger deseq2

updated 14 months ago by khanwaled68 • 0 • written 9.7 years ago by florian.noack ▴ 60

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2.6k

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R medips medip-seq

9.3 years ago • updated 8.4 years ago stb • 0

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2.3k

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medips medip-seq error lukas

updated 8.5 years ago by Matthias Lienhard ▴ 280 • written 8.5 years ago by anupriyaverma1408 • 0

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1.6k

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medips medip-seq peak finding luckas

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by anupriyaverma1408 • 0

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1.6k

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medips R medip-seq pair-end reads

updated 9.0 years ago by Lukas Chavez ▴ 570 • written 9.0 years ago by stb • 0

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1.5k

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medips medip-seq R pair-end reads

updated 9.2 years ago by Lukas Chavez ▴ 570 • written 9.2 years ago by stb • 0

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1.9k

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R medip-seq medips bwa

updated 9.3 years ago by Lukas Chavez ▴ 570 • written 9.3 years ago by stb • 0

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1.7k

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annotation chippeakanno rattus norvegicus medip-seq

9.7 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…

Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k

The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…

Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k

The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…

Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k

Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…

Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k

The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …

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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

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