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MeDIP-seq
•
reset
0
votes
0
replies
940
views
How to use MeDIPS with BEDPE format input?
R
medip-seq
MEDIPS
2.9 years ago
Luomeng
• 0
7
votes
9
replies
2.7k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
4.6 years ago
rtrivedi1
▴ 10
4
votes
5
replies
2.0k
views
Extracting normalized counts in MEDIPS
MEDIPS
MeDIP-seq
updated 4.3 years ago by
Lukas
▴ 20 • written 6.1 years ago by
lshepard
▴ 40
0
votes
0
replies
1.1k
views
Calculating short read coverage at genome wide windows for create.set- MEDIPS
medip-seq
createset
updated 7.0 years ago by
Bioconductor Community
0 • written 7.1 years ago by
oussama.badad
• 0
1
vote
2
replies
1.4k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 7.1 years ago by
Lukas Chavez
▴ 570 • written 7.1 years ago by
mtefit
• 0
0
votes
0
replies
1.1k
views
All fragments/sequences captured using MeDIP are methylated?
medip-seq
methylation
CpGs
7.1 years ago
saripalligautam86
▴ 10
1
vote
6
replies
2.8k
views
MEDIP: Problem with MEDIPS.createSet
medips
bsgenome
medip-seq
updated 7.8 years ago by
Lukas Chavez
▴ 570 • written 7.8 years ago by
vjain
• 0
16
votes
12
replies
9.4k
views
Diffbind: edgeR or DESeq2 ?
diffbind
medip-seq
edger
deseq2
updated 15 months ago by
khanwaled68
• 0 • written 9.8 years ago by
florian.noack
▴ 60
0
votes
6
replies
2.6k
views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R
medips
medip-seq
9.4 years ago • updated 8.5 years ago
stb
• 0
3
votes
5
replies
2.3k
views
CNV parameter not working - MEDIPS
medips
medip-seq
error
lukas
updated 8.6 years ago by
Matthias Lienhard
▴ 280 • written 8.6 years ago by
anupriyaverma1408
• 0
1
vote
1
reply
1.6k
views
Window size for MEDIPS
medips
medip-seq
peak finding
luckas
updated 8.6 years ago by
Lukas Chavez
▴ 570 • written 8.6 years ago by
anupriyaverma1408
• 0
0
votes
1
reply
1.6k
views
Insertion size when using 'paired' in MEDIPS.createSet()
medips
R
medip-seq
pair-end reads
updated 9.1 years ago by
Lukas Chavez
▴ 570 • written 9.1 years ago by
stb
• 0
0
votes
1
reply
1.5k
views
How does the 'paired' argument works in MeDIPS 1.23.2
medips
medip-seq
R
pair-end reads
updated 9.3 years ago by
Lukas Chavez
▴ 570 • written 9.3 years ago by
stb
• 0
1
vote
1
reply
2.0k
views
MeDIPS and use of the 'bwa' parameter
R
medip-seq
medips
bwa
updated 9.4 years ago by
Lukas Chavez
▴ 570 • written 9.4 years ago by
stb
• 0
0
votes
0
replies
1.7k
views
count overlapping reads for CpG islands and annotate with gene names?
annotation
chippeakanno
rattus norvegicus
medip-seq
9.8 years ago
Vang Le
▴ 80
15 results • Page
1 of 1
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Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Answer: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP
by
victor04052024
• 0
You write quite well, and the content is very interesting. I'll provide you a link to my page [granny 2](https://granny2.io).
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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