Bioconductor MeDIP-seq

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900

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R medip-seq MEDIPS

2.7 years ago Luomeng • 0

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2.5k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

4.5 years ago • updated 4.4 years ago rtrivedi1 ▴ 10

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1.9k

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MEDIPS MeDIP-seq

updated 4.1 years ago by Lukas ▴ 20 • written 6.0 years ago by lshepard ▴ 40

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1.0k

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medip-seq createset

updated 6.8 years ago by Bioconductor Community 0 • written 6.9 years ago by oussama.badad • 0

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1.4k

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medips medip-seq dna methylation dmr analysis

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by mtefit • 0

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1.1k

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medip-seq methylation CpGs

7.0 years ago saripalligautam86 ▴ 10

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2.7k

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medips bsgenome medip-seq

updated 7.6 years ago by Lukas Chavez ▴ 570 • written 7.6 years ago by vjain • 0

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9.2k

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diffbind medip-seq edger deseq2

updated 14 months ago by khanwaled68 • 0 • written 9.6 years ago by florian.noack ▴ 60

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2.5k

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R medips medip-seq

9.2 years ago • updated 8.4 years ago stb • 0

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2.3k

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medips medip-seq error lukas

updated 8.5 years ago by Matthias Lienhard ▴ 280 • written 8.5 years ago by anupriyaverma1408 • 0

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1.6k

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medips medip-seq peak finding luckas

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by anupriyaverma1408 • 0

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1.6k

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medips R medip-seq pair-end reads

updated 8.9 years ago by Lukas Chavez ▴ 570 • written 8.9 years ago by stb • 0

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1.4k

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medips medip-seq R pair-end reads

updated 9.1 years ago by Lukas Chavez ▴ 570 • written 9.1 years ago by stb • 0

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1.9k

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R medip-seq medips bwa

updated 9.2 years ago by Lukas Chavez ▴ 570 • written 9.2 years ago by stb • 0

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1.7k

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annotation chippeakanno rattus norvegicus medip-seq

9.7 years ago Vang Le ▴ 80

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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