Bioconductor MeDIP-seq

Showing : MeDIP-seq • reset

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746

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R medip-seq MEDIPS

2.0 years ago Luomeng • 0

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2.1k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

3.8 years ago • updated 3.7 years ago rtrivedi1 ▴ 10

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1.6k

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MEDIPS MeDIP-seq

updated 3.4 years ago by Lukas ▴ 20 • written 5.3 years ago by lshepard ▴ 40

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917

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medip-seq createset

updated 6.1 years ago by Bioconductor Community 0 • written 6.2 years ago by oussama.badad • 0

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1.2k

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medips medip-seq dna methylation dmr analysis

updated 6.2 years ago by Lukas Chavez ▴ 570 • written 6.2 years ago by mtefit • 0

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989

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medip-seq methylation CpGs

6.3 years ago saripalligautam86 ▴ 10

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2.3k

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medips bsgenome medip-seq

updated 6.9 years ago by Lukas Chavez ▴ 570 • written 6.9 years ago by vjain • 0

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8.2k

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diffbind medip-seq edger deseq2

updated 5 months ago by khanwaled68 • 0 • written 8.9 years ago by florian.noack ▴ 60

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2.2k

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R medips medip-seq

8.5 years ago • updated 7.7 years ago stb • 0

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1.9k

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medips medip-seq error lukas

updated 7.8 years ago by Matthias Lienhard ▴ 280 • written 7.8 years ago by anupriyaverma1408 • 0

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1.4k

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medips medip-seq peak finding luckas

updated 7.8 years ago by Lukas Chavez ▴ 570 • written 7.8 years ago by anupriyaverma1408 • 0

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1.4k

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medips R medip-seq pair-end reads

updated 8.2 years ago by Lukas Chavez ▴ 570 • written 8.2 years ago by stb • 0

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1.3k

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medips medip-seq R pair-end reads

updated 8.4 years ago by Lukas Chavez ▴ 570 • written 8.4 years ago by stb • 0

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1.7k

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R medip-seq medips bwa

updated 8.5 years ago by Lukas Chavez ▴ 570 • written 8.5 years ago by stb • 0

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1.5k

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annotation chippeakanno rattus norvegicus medip-seq

9.0 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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Popular Question to Mark Dunning ★ 1.1k