Bioconductor MeDIP-seq

Showing : MeDIP-seq • reset

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935

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R medip-seq MEDIPS

2.9 years ago Luomeng • 0

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2.7k

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MEDIP-seq CNV TCGA450KHumanMethylationCalibrationDataset qsea PRAD

4.6 years ago rtrivedi1 ▴ 10

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2.0k

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MEDIPS MeDIP-seq

updated 4.2 years ago by Lukas ▴ 20 • written 6.1 years ago by lshepard ▴ 40

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1.1k

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medip-seq createset

updated 6.9 years ago by Bioconductor Community 0 • written 7.1 years ago by oussama.badad • 0

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1.4k

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medips medip-seq dna methylation dmr analysis

updated 7.1 years ago by Lukas Chavez ▴ 570 • written 7.1 years ago by mtefit • 0

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1.1k

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medip-seq methylation CpGs

7.1 years ago saripalligautam86 ▴ 10

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2.8k

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medips bsgenome medip-seq

updated 7.8 years ago by Lukas Chavez ▴ 570 • written 7.8 years ago by vjain • 0

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9.3k

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diffbind medip-seq edger deseq2

updated 15 months ago by khanwaled68 • 0 • written 9.8 years ago by florian.noack ▴ 60

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2.6k

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R medips medip-seq

9.4 years ago • updated 8.5 years ago stb • 0

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2.3k

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medips medip-seq error lukas

updated 8.6 years ago by Matthias Lienhard ▴ 280 • written 8.6 years ago by anupriyaverma1408 • 0

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1.6k

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medips medip-seq peak finding luckas

updated 8.6 years ago by Lukas Chavez ▴ 570 • written 8.6 years ago by anupriyaverma1408 • 0

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1.6k

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medips R medip-seq pair-end reads

updated 9.0 years ago by Lukas Chavez ▴ 570 • written 9.0 years ago by stb • 0

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1.5k

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medips medip-seq R pair-end reads

updated 9.2 years ago by Lukas Chavez ▴ 570 • written 9.3 years ago by stb • 0

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2.0k

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R medip-seq medips bwa

updated 9.4 years ago by Lukas Chavez ▴ 570 • written 9.4 years ago by stb • 0

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1.7k

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annotation chippeakanno rattus norvegicus medip-seq

9.8 years ago Vang Le ▴ 80

15 results • Page 1 of 1

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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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