Bioconductor Methylation

Showing : Methylation • reset

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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2.0k

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ChAMP methylation BMIQ

updated 5 months ago by peter.brederlo • 0 • written 5.0 years ago by moldach ▴ 20

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1.8k

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ChAMP champ methylation

updated 8 months ago by mike • 0 • written 4.1 years ago by jkong • 0

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238

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EPICV1 Methylation combineArrays minifi EPICv2manifest

updated 29 days ago by Tim Peters ▴ 170 • written 29 days ago by Kim • 0

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1.4k

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minfi software error methylation illumina450k

updated 11 months ago by kuzn.di • 0 • written 8.4 years ago by pm2015 • 0

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541

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edgeR methylation

updated 3 months ago by Gordon Smyth 50k • written 3 months ago by sat • 0

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157

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bsseq methylation

updated 4 weeks ago by James W. MacDonald 65k • written 4 weeks ago by ja569116 • 0

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255

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Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm

4 months ago kyj2226 • 0

8 results • Page 1 of 1

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Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

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A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

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