Showing : MotifbreakR • reset
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
Biostrings aminoacid motifbreakR
written 12 weeks ago by • 0
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motifBreakR error with custom BSgenome
GenomeInfoDb motifbreakR
3.6 years ago Chris Seidel ▴ 80
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How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR R motifs
5.6 years ago camerond • 0
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Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 6.4 years ago by ★ 6.8k • written 6.4 years ago by ▴ 830
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Motif Breaker error
bioconductor motifbreakr plotmb
7.0 years ago priyankaraina10 • 0
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motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR variantannotation
updated 9.1 years ago by ▴ 50 • written 9.1 years ago by ▴ 20
6 results • Page 1 of 1
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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