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OmicCircos
•
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0
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0
replies
727
views
Question about OmicCircos
OmicCircos
6.6 years ago
ch8316f5eyu
• 0
0
votes
0
replies
1.1k
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
7.2 years ago
mictadlo
▴ 10
0
votes
0
replies
1.1k
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
7.2 years ago
Didi
▴ 10
2
votes
3
replies
3.8k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 7.3 years ago by
yifangt
▴ 20 • written 9.9 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.4k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.5 years ago
matthew.bashton
• 0
0
votes
1
reply
1.7k
views
Circos Tile colors
OmicCircos
RCircos
updated 7.6 years ago by
bernatgel
▴ 150 • written 7.6 years ago by
Radek
▴ 90
0
votes
1
reply
2.5k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
7.7 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.2k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
7.8 years ago
theobroma22
▴ 10
0
votes
0
replies
1.4k
views
OmicCircos barplot height and scale
omiccircos
7.9 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
880
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
7.9 years ago
Didi
▴ 10
0
votes
0
replies
974
views
Zoom function in OmicCircos
OmicCircos
Zoom
7.9 years ago
abmora
• 0
0
votes
0
replies
884
views
How to plot a single segment using OmicCircos?
omiccircos
8.3 years ago
Shambho
• 0
1
vote
0
replies
869
views
the 23re and 24th segs cannot be plotted
OmicCircos
8.4 years ago
magcj89
▴ 10
3
votes
2
replies
2.8k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 8.7 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 8.7 years ago by
pertille
• 0
0
votes
0
replies
1.4k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
8.9 years ago
Gary
▴ 20
0
votes
0
replies
1.6k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
9.5 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.5k
views
News:
OmicCircos was updated
visualization
omiccircos
News
9.7 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.6k
views
OmicCircos mapping data file.
omiccircos
updated 9.7 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.1 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
1.8k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 9.7 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.1 years ago by
micahgearhart
• 0
0
votes
2
replies
2.1k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 9.7 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.7 years ago by
wei.shen
• 0
0
votes
1
reply
1.5k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
9.9 years ago
Peter.Wood
• 0
21 results • Page
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Comment: Differene between the Wald and LRT test for time-series gene expression data
by
Denise
• 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units
by
elozanoe
• 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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