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OmicCircos
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Question about OmicCircos
OmicCircos
7.8 years ago
ch8316f5eyu
• 0
0
votes
0
replies
1.4k
views
Synteny plots with OmicCircos or Rcircos
omiccircos
rcircos
8.3 years ago
mictadlo
▴ 10
0
votes
0
replies
1.4k
views
Omiccircos: how to draw a circos plot for non-model organisms
omiccircos
seganglepo
sim.circos
circos
8.4 years ago
Didi
▴ 10
2
votes
3
replies
4.5k
views
Making a circos plot to show expression for a gene set rather than whole genome
Gene set
gene set analysis
omiccircos
updated 8.4 years ago by
yifangt
▴ 20 • written 11.0 years ago by
Peter.Wood
• 0
0
votes
0
replies
1.7k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
8.7 years ago
matthew.bashton
• 0
0
votes
1
reply
2.0k
views
Circos Tile colors
OmicCircos
RCircos
updated 8.8 years ago by
bernatgel
▴ 150 • written 8.8 years ago by
Radek
▴ 90
0
votes
1
reply
2.9k
views
OmicCircos - Error in 1:scale.n : NA/NaN argument
OmicCircos
8.9 years ago
Stefan Langenberg
• 0
0
votes
0
replies
1.4k
views
OmicCircos Error in Colnames attribute mus be the same length as the vector
r
omiccircos
9.0 years ago
theobroma22
▴ 10
0
votes
0
replies
1.6k
views
OmicCircos barplot height and scale
omiccircos
9.1 years ago
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
1.1k
views
OmicCircos for non human genomes
omiccircos
rnaseq
plants
9.1 years ago
Didi
▴ 10
0
votes
0
replies
1.2k
views
Zoom function in OmicCircos
OmicCircos
Zoom
9.1 years ago
abmora
• 0
0
votes
0
replies
1.1k
views
How to plot a single segment using OmicCircos?
omiccircos
9.4 years ago
Shambho
• 0
1
vote
0
replies
1.0k
views
the 23re and 24th segs cannot be plotted
OmicCircos
9.6 years ago
magcj89
▴ 10
3
votes
2
replies
3.1k
views
How to represent a relationship between physical map and linkage map of a sequenced data using OmicCircos or another similar
omiccircos
software R
bioconductor for genomic data science
linkage disequilibrium
updated 9.8 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 9.9 years ago by
pertille
• 0
0
votes
0
replies
1.7k
views
Can OmicCircos handle chicken ChIA-PET interactome?
OmicCircos
chicken
10.1 years ago
Gary
▴ 20
0
votes
0
replies
1.9k
views
Circos Styling plots is now easy with canceR package
canceR
visualization
omiccircos
10.7 years ago
kmezhoud
▴ 10
0
votes
0
replies
1.6k
views
News:
OmicCircos was updated
visualization
omiccircos
News
10.9 years ago
Hu, Ying NIH/NCI [E]
▴ 50
1
vote
3
replies
1.9k
views
OmicCircos mapping data file.
omiccircos
updated 10.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.2 years ago by
abdul rawoof
▴ 60
0
votes
1
reply
2.1k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 11.3 years ago by
micahgearhart
• 0
0
votes
2
replies
2.6k
views
How to specifiy colors for polygon links when using circos function of OmicCircos package
graph
omiccircos
updated 10.9 years ago by
Hu, Ying NIH/NCI [E]
▴ 50 • written 10.9 years ago by
wei.shen
• 0
0
votes
1
reply
1.7k
views
Larger values masking others for OmicCircos heatmap
differential gene expression
heatmap
Circos
omiccircos
11.0 years ago
Peter.Wood
• 0
21 results • Page
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Answer: Confirm that OpenStats will not be archived (pryr dependency)
by
shepherl
4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
by
Michael Love
43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
by
Federico Marini
▴ 180
Jumping in on this - all this started because we want to "do it right", i.e. avoiding the post-hoc filtering on the logFC (which is still w…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
by
Michael Love
43k
it looks above like you have a gene with two non-zero count samples. Also, yes you can use a stricter filter. You cannot estimate the LFC …
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
by
Ahmed Salah
• 0
Thank you very much for your answer. Actually, this is after pre-filtering ```r keep <- rowSums(counts(dds) >= 10) >= 3 dds <- dds[keep, …
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Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
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