Showing : Ontology • reset
4
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Is there any description available for KEGG Pathway Edge Types
KEGG SystemsBiology KEGGgraph ontology
3.2 years ago Wuschel ▴ 10
1
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0
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1.5k
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adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
3.3 years ago Kevin Gregory ▴ 10
1
vote
2
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1.2k
views
gene ontologies for a set of genes
gene ontology
4.4 years ago Bogdan ▴ 670
1
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5
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2.1k
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Gene Ontology analysis
ontology edger limma ncbi organism package
updated 5.8 years ago by 53k • written 5.8 years ago by ▴ 20
3
votes
3
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1.9k
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Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
1
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1
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1.6k
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News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
7.3 years ago laurent.albou • 0
3
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3
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1.6k
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source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 7.3 years ago by • 0 • written 7.3 years ago by ▴ 10
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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