Bioconductor Ontology

Showing : Ontology • reset

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3.5k

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KEGG SystemsBiology KEGGgraph ontology

2.2 years ago Wuschel ▴ 10

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1.1k

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topGO Ontology DifferentialExpression

2.3 years ago Kevin Gregory ▴ 10

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933

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gene ontology

3.4 years ago Bogdan ▴ 670

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1.7k

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ontology edger limma ncbi organism package

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by babak.loghmani ▴ 20

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1.5k

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go topGO gene ontology enrichment

updated 5.5 years ago by James W. MacDonald 67k • written 5.5 years ago by t.bergmann • 0

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1.4k

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gene ontology go ontology bioinformatics genomics News

6.3 years ago laurent.albou • 0

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1.3k

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GO ontology GO.db

updated 6.3 years ago by apkmirrorproject • 0 • written 6.4 years ago by marcinjoachimiak ▴ 10

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Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

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Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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