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Ontology
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reset
4
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2
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5.2k
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Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
3.1 years ago
Wuschel
▴ 10
1
vote
0
replies
1.4k
views
adjusted p-values with topGO elim.KS method
topGO
Ontology
DifferentialExpression
3.2 years ago
Kevin Gregory
▴ 10
1
vote
2
replies
1.2k
views
gene ontologies for a set of genes
gene
ontology
4.3 years ago
Bogdan
▴ 670
1
vote
5
replies
2.0k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 5.7 years ago by
Gordon Smyth
53k • written 5.7 years ago by
babak.loghmani
▴ 20
3
votes
3
replies
1.8k
views
Discrepancies between topGO output and input
go
topGO
gene
ontology
enrichment
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
t.bergmann
• 0
1
vote
1
reply
1.5k
views
News:
Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology
go
ontology
bioinformatics
genomics
News
7.2 years ago
laurent.albou
• 0
3
votes
3
replies
1.6k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 7.2 years ago by
apkmirrorproject
• 0 • written 7.2 years ago by
marcinjoachimiak
▴ 10
7 results • Page
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Comment: Senior Teaching Fellow (MSc Computational Biomedicine)
by
eja.ger.m
• 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Well I got duplicate FDRs. For those wondering why there are duplicate adjusted p-values, see [p.adjust BH generates duplicate values][1] …
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
ATpoint
★ 5.0k
Since the donor effect is so clear I assume that a paired analysis within donor is strictly necessary to get DEGs, and therefore one would …
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
forgot to attach some other plots, which may be informative... RLE plot ![enter image description here][1] pvalue distribution ![enter …
Comment: upstream git branches of bioc-release
by
andres.wokaty
▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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