Showing : PROcess • reset
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get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
13.2 years ago delhomme@embl.de ★ 1.2k
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1.9k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
13.2 years ago McGee, Monnie ▴ 300
0
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1
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999
views
a question about the low level match function
PROcess PROcess
updated 13.2 years ago by ▴ 590 • written 13.2 years ago by ★ 2.0k
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Removing overlapping genes from annotation for RNAseq read count
RNASeq Annotation PROcess DESeq RNASeq Annotation PROcess DESeq
13.2 years ago Guest User ★ 13k
0
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4
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2.5k
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KEGGgraph
Pathways Organism graph PROcess KEGGgraph Pathways Organism graph PROcess KEGGgraph
13.2 years ago Ricardo Silva ▴ 110
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5
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2.0k
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frma for Nimblegen arrays?
Microarray Normalization affy PROcess safe frma Microarray Normalization affy PROcess
updated 13.3 years ago by ▴ 830 • written 13.3 years ago by ▴ 260
0
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1
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925
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annotation package building
Annotation Organism PROcess Annotation Organism PROcess
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ▴ 60
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0
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1.9k
views
450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation db0 probe annotate PROcess GenomicFeatures GenomicRanges Annotation db0 probe
13.3 years ago Marc Carlson ★ 7.2k
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1.2k
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get synthetic exon dataset with easyRNASeq
RNASeq Annotation Normalization GO PROcess easyRNASeq RNASeq Annotation Normalization GO
13.3 years ago delhomme@embl.de ★ 1.2k
0
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3
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1.3k
views
DEXSeq offset term
Normalization PROcess DEXSeq Normalization PROcess DEXSeq
updated 13.3 years ago by ★ 1.9k • written 13.3 years ago by ★ 13k
0
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1
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1.2k
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warnings on easyRNASeq package
Annotation Organism PROcess GenomicRanges easyRNASeq Annotation Organism PROcess
updated 13.3 years ago by ▴ 10 • written 13.3 years ago by ★ 1.2k
0
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1
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1.6k
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(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 13.4 years ago by 68k • written 13.4 years ago by ▴ 30
0
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0
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1.4k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
13.4 years ago Seyed Ahmad Mousavi ▴ 10
0
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1
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926
views
readPositonalinfo
PROcess PROcess
updated 13.4 years ago by ★ 1.6k • written 13.4 years ago by ▴ 30
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1
reply
1.2k
views
readPositionalInfo
PROcess PROcess
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 30
0
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1
reply
1.4k
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Problem with addGeneIDs and org.Sc.sgd.db
Annotation PROcess Annotation PROcess
updated 13.4 years ago by ★ 7.2k • written 13.5 years ago by ▴ 50
0
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5
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1.8k
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Visualizing the region of classification uncertainty on thresholded images
PROcess PROcess
updated 13.5 years ago by ▴ 650 • written 13.5 years ago by ★ 13k
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1
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1.7k
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biomaRt 'Please report this to the mailing list'
PROcess biomaRt PROcess biomaRt
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 170
0
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1
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1.1k
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edgeR- data for case studies
SAGE PROcess edgeR SAGE PROcess edgeR
updated 13.5 years ago by ▴ 140 • written 13.5 years ago by 53k
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0
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900
views
edgeR- data for case studies
PROcess edgeR PROcess edgeR
13.5 years ago Johnson, Franklin Theodore ▴ 140
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5
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3.0k
views
EasyRNASeq issue (missing bai files)
GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ★ 1.2k
0
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0
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1.7k
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SRAdb: differences between the database and the NCBI website
PROcess SRAdb PROcess SRAdb
13.6 years ago Ben Woodcroft ▴ 40
0
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0
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793
views
Illumnia Filtering
Sequencing PROcess Sequencing PROcess
13.6 years ago Fatemehsadat Seyednasrollah ▴ 260
0
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1
reply
1.3k
views
SWAN normalization for HumanMethylation450K - minfi
Normalization PROcess minfi Normalization PROcess minfi
13.6 years ago Lucia Lam ▴ 20
0
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1.4k
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miRNA exiqon panels and HTqPCR
miRNA qPCR PROcess HTqPCR miRNA qPCR PROcess HTqPCR
13.6 years ago Heidi Dvinge ★ 2.0k
0
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1
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2.4k
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GEOquery, GSEMatrix parameter and lifecycle of GEO series data
GO Biobase PROcess GEOquery GO Biobase PROcess GEOquery
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 440
0
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3
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2.3k
views
GEOquery, GSEMatrix parameter and lifecycle of GEO series data
PROcess GEOquery PROcess GEOquery
13.6 years ago Gustavo Fernández Bayón ▴ 440
0
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6
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1.7k
views
readGapppedAlignmentpairs questions
Coverage PROcess Coverage PROcess
updated 13.6 years ago by ★ 3.6k • written 13.6 years ago by ▴ 250
0
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0
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842
views
Coverage on GappedAlignment Pairs
Coverage PROcess Coverage PROcess
13.6 years ago Lakshmanan Iyer ▴ 50
0
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1
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1.3k
views
xps scheme building
Annotation PROcess xps Annotation PROcess xps
updated 13.6 years ago by ★ 3.9k • written 13.6 years ago by ▴ 930
0
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3
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2.1k
views
Non-Specific Filtering with "nsFilter" Question
probe genefilter PROcess probe genefilter PROcess
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 160
0
votes
1
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1.2k
views
Problem in filtering of single color microarrray data using LIMMA
Microarray Preprocessing limma PROcess Microarray Preprocessing limma PROcess
updated 13.6 years ago by ▴ 130 • written 13.6 years ago by ▴ 60
0
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0
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1.4k
views
importing iScan data into beadarray
PROcess beadarray PROcess beadarray
13.6 years ago Craig Johnson ▴ 20
0
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0
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1.0k
views
pairwiseAlignment of PDB files to canonical protein structure
Alignment Biostrings PROcess Alignment Biostrings PROcess
13.7 years ago Gregory Ryslik ▴ 10
0
votes
6
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2.7k
views
error installing Rgraphviz
Rgraphviz PROcess BiocInstaller Rgraphviz PROcess BiocInstaller
updated 13.7 years ago by ★ 8.2k • written 13.7 years ago by ▴ 10
0
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1
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1.4k
views
miRNA and other small RNAs
miRNA Alignment Annotation PROcess miRNA Alignment Annotation PROcess
updated 13.7 years ago by ▴ 330 • written 13.7 years ago by ▴ 70
0
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1
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1.7k
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flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess flowWorkspace PROcess flowWorkspace
updated 13.8 years ago by ▴ 30 • written 13.8 years ago by ▴ 240
0
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1
reply
2.0k
views
deprecated head file for RBGL and compilation failure
graph RBGL PROcess graph RBGL PROcess
updated 13.8 years ago by 6.7k • written 13.8 years ago by ★ 13k
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0
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1.6k
views
Illumina beadarray analysis with lumi
Normalization Preprocessing probe PROcess beadarray lumi Normalization Preprocessing probe
13.8 years ago Ahmet ZEHIR ▴ 50
0
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0
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1.7k
views
flowWorkspace transformation on FCS 3 data
PROcess flowWorkspace PROcess flowWorkspace
13.8 years ago Nikolas ▴ 30
0
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0
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1.0k
views
Can beadarray be use to analyze iScan raw data without perBeadFile.txt files?
PROcess beadarray PROcess beadarray
13.8 years ago Mike Smith ★ 6.6k
0
votes
1
reply
1.1k
views
Problems easyRNASeq
Annotation PROcess easyRNASeq Annotation PROcess easyRNASeq
updated 13.8 years ago by ★ 1.2k • written 13.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Can beadarray be use to analyze iScan raw data without perBeadFile.txt files?
PROcess beadarray PROcess beadarray
updated 13.8 years ago by ★ 6.6k • written 13.8 years ago by ★ 13k
0
votes
7
replies
2.2k
views
Install error affxparser for R 2.15
PROcess affxparser BiocInstaller PROcess affxparser BiocInstaller
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 60
0
votes
0
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1.5k
views
JOB: Research Associate in Statistical Epigenomics (London)
Cancer Ovarian PROcess Cancer Ovarian PROcess
13.9 years ago Andrew Teschendorff ▴ 60
0
votes
1
reply
1.6k
views
Checking RNAseq DESeq pipeline
Sequencing PROcess DESeq Sequencing PROcess DESeq
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 280
0
votes
1
reply
1.7k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 13.9 years ago by ▴ 830 • written 13.9 years ago by ▴ 20
0
votes
0
replies
2.1k
views
reading with lumi
Preprocessing PROcess lumi methylumi Preprocessing PROcess lumi methylumi
13.9 years ago Tim Triche ★ 4.2k
0
votes
3
replies
6.6k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 3.6 years ago by • 0 • written 13.9 years ago by ★ 7.2k
0
votes
1
reply
1.2k
views
[R] tapply for enormous (>2^31 row) matrices
PROcess PROcess
updated 13.9 years ago by ▴ 30 • written 13.9 years ago by ▴ 100
651 results • Page 4 of 14
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Good point, I hadn't considered the fact quantitative `time` implies a (logit-)linear response *to* time. You're correct that I haven't exp…
Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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