Bioconductor PWM

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1.2k

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universalmotif scanning enrich_motifs PWM

3.8 years ago alexandre.blais ▴ 50

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2.5k

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pwm pfm jaspar motifdb

updated 6.8 years ago by Bioconductor Community 0 • written 6.9 years ago by chrisclarkson100 ▴ 50

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1.1k

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pwm motifs jaspar meme motif analysis

6.9 years ago rbronste ▴ 60

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2.9k

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pwm tfbstools jaspar

updated 8.1 years ago by Ge Tan ▴ 20 • written 8.1 years ago by chrisclarkson100 ▴ 50

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1.7k

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biostrings seqlogo pwm

updated 9.0 years ago by Marcel Ramos 700 • written 9.0 years ago by clausdkuhn • 0

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1.1k

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biostrings pwm

9.2 years ago Stefanie Tauber ▴ 40

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1.9k

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motifdb matchpwm motif pwmenrich pwm

10.0 years ago vinod.acear ▴ 50

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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