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PWMEnrich
•
reset
1
vote
3
replies
1.4k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.7 years ago
oliwindram
▴ 10
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.7 years ago by
Robert Stojnic
▴ 50 • written 8.7 years ago by
enricoferrero
▴ 660
0
votes
1
reply
799
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.2 years ago
amanda.joy.price
• 0
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.5 years ago by
Robert Stojnic
▴ 50 • written 8.5 years ago by
elliott77
• 0
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.7 years ago by
Robert Stojnic
▴ 50 • written 10.7 years ago by
Guest User
★ 13k
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.4 years ago by
Robert Stojnic
▴ 80 • written 10.5 years ago by
Fabrice Tourre
▴ 970
2
votes
3
replies
1.8k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.2 years ago by
Robert Stojnic
▴ 50 • written 8.2 years ago by
sekawaiwai2006
▴ 20
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.7 years ago by
Robert Stojnic
▴ 80 • written 9.7 years ago by
deepti anand
▴ 50
0
votes
0
replies
649
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.4 years ago
intregen
• 0
0
votes
0
replies
803
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
9.9 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.5 years ago
vinod.acear
▴ 50
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.2 years ago
enricoferrero
▴ 660
0
votes
0
replies
994
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.8 years ago
sekawaiwai2006
▴ 20
0
votes
0
replies
690
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.3 years ago
prp291
• 0
0
votes
0
replies
741
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.0 years ago
gdeniz
• 0
16 results • Page
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Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
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by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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