Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
PWMEnrich
•
reset
0
votes
0
replies
647
views
How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.3 years ago
intregen
• 0
0
votes
0
replies
737
views
makeBackground error message "Sequence only contain N's"
pwmenrich
6.0 years ago
gdeniz
• 0
0
votes
1
reply
794
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.2 years ago
amanda.joy.price
• 0
0
votes
0
replies
688
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.3 years ago
prp291
• 0
0
votes
1
reply
1.9k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.7 years ago by
Ou, Jianhong
★ 1.3k • written 7.7 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
989
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.8 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.1 years ago by
Robert Stojnic
▴ 50 • written 8.1 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.2 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.5 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.5 years ago by
Robert Stojnic
▴ 50 • written 8.5 years ago by
elliott77
• 0
2
votes
1
reply
1.1k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.7 years ago by
Robert Stojnic
▴ 50 • written 8.7 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.4k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.7 years ago
oliwindram
▴ 10
0
votes
5
replies
2.5k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.7 years ago by
Robert Stojnic
▴ 80 • written 9.7 years ago by
deepti anand
▴ 50
0
votes
0
replies
780
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
9.9 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.4 years ago by
Robert Stojnic
▴ 80 • written 10.4 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.7 years ago by
Robert Stojnic
▴ 50 • written 10.7 years ago by
Guest User
★ 13k
16 results • Page
1 of 1
Recent ...
Replies
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Awards
• All
Popular Question
to
Gyan Prakash Mishra
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
Popular Question
to
Malcolm Cook
★ 1.6k
Locations
• All
Australia,
1 minute ago
United States,
36 minutes ago
India,
39 minutes ago
WEHI, Melbourne, Australia,
40 minutes ago
United States,
1 hour ago
Traffic: 518 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6