Bioconductor PWMEnrich

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pwmenrich log

updated 8.8 years ago by Robert Stojnic ▴ 50 • written 8.8 years ago by enricoferrero ▴ 660

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pwmenrich dnastringset

updated 8.2 years ago by Robert Stojnic ▴ 50 • written 8.2 years ago by sekawaiwai2006 ▴ 20

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pwmenrich bsgenome

8.8 years ago oliwindram ▴ 10

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BSgenome convert BSgenome PWMEnrich MotifDb

updated 9.7 years ago by Robert Stojnic ▴ 80 • written 9.7 years ago by deepti anand ▴ 50

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pwmenrich MotifDB

updated 8.5 years ago by Robert Stojnic ▴ 50 • written 8.6 years ago by elliott77 • 0

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motifdb matchpwm motif pwmenrich pwm

8.5 years ago vinod.acear ▴ 50

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motfdb pwmenrich meme

8.2 years ago enricoferrero ▴ 660

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PWMenrich

7.8 years ago sekawaiwai2006 ▴ 20

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homer pwmenrich

updated 7.7 years ago by Ou, Jianhong ★ 1.3k • written 7.7 years ago by sarah.blackstone7734 • 0

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r pwmenrich

6.3 years ago prp291 • 0

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PWMEnrich

6.2 years ago amanda.joy.price • 0

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pwmenrich

6.1 years ago gdeniz • 0

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PWMEnrich PWMEnrich

updated 10.7 years ago by Robert Stojnic ▴ 50 • written 10.7 years ago by Guest User ★ 13k

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PWMEnrich

5.4 years ago intregen • 0

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PWMEnrich PWMEnrich

updated 10.5 years ago by Robert Stojnic ▴ 80 • written 10.5 years ago by Fabrice Tourre ▴ 970

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807

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PWMEnrich PWMEnrich

9.9 years ago enricoferrero ▴ 660

16 results • Page 1 of 1

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Comment: Error in gseDO function by Javier • 0

Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by Ali Osman • 0

Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…

Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU by Marek Gierlinski ▴ 30

Two years on and the issue is still there. Thank you Arthur for the solution!

Comment: Cannot install oligo on Fedora by mbassal • 0

so whats the solution for this error?

Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)? by ATpoint ★ 4.2k

I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…

Votes

A: DESeq2: add annotations (from data frame) to DESeqDataSet

Answer: Error in gseDO function

Comment: what the test method for enrichGO in clusterProfiler?

A: Comparison between two different group's pathway analysis results

DiffBind Batch Effect

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