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Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
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I don't have an answer to the "why" but maybe a simple reimplemention will do:
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seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
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After checking `?DESeqDataSetFromMatrix` note this information:
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Yes, you are missing something. :-)
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No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
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Could you try this?
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