Showing : Regression • reset
0
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.2 years ago Julie Zhu ★ 4.3k
11
votes
3
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1.8k
views
Fit a multinomial to RNA-seq count data
voom limma glm multinomial regression
updated 7.8 years ago by ★ 3.3k • written 7.8 years ago by ▴ 110
0
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7
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1.4k
views
M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 20.2 years ago by ★ 6.0k • written 20.3 years ago by ★ 2.0k
0
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7
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1.8k
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affy code archeology: expresso behavior for liwong/invariantset
Regression gcrma Regression gcrma
updated 11.3 years ago by 65k • written 11.3 years ago by ★ 13k
2
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5
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15k
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Limma design and contrast matrix question.
Microarray Regression limma Microarray Regression limma
updated 10.3 years ago by 65k • written 10.3 years ago by ▴ 360
1
vote
3
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2.1k
views
limma report logFC confidence interval?
Regression limma Regression limma
updated 2.9 years ago by 50k • written 13.3 years ago by ▴ 40
0
votes
2
replies
1.1k
views
Drosophila GeneChip analysis
Regression Regression
updated 20.0 years ago by ▴ 620 • written 20.0 years ago by ▴ 30
0
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5
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1.2k
views
IRanges causes bug in complete.cases
Regression IRanges Regression IRanges
updated 14.4 years ago by ★ 11k • written 14.4 years ago by ★ 6.5k
0
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5
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1.3k
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limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 17.1 years ago by ★ 1.1k • written 17.1 years ago by 50k
0
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2
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3.5k
views
multtest and Cox regression
Regression multtest Regression multtest
updated 19.1 years ago by ▴ 10 • written 19.1 years ago by ▴ 140
0
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5
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3.0k
views
Finding genes with significant linear regression or trend
Microarray Regression Cancer limma DOSE Microarray Regression Cancer limma DOSE
updated 16.0 years ago by ▴ 340 • written 16.0 years ago by ★ 1.9k
0
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4
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2.1k
views
How to create nested data frames
Regression Regression
16.6 years ago Ana Conesa ▴ 130
2
votes
23
replies
3.6k
views
Coping with a label/class imbalance in DESeq2
deseq2 rnaseq r regression
updated 7.6 years ago by 42k • written 7.6 years ago by • 0
0
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3
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1.4k
views
GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 13.3 years ago by ▴ 250 • written 13.3 years ago by ★ 4.0k
1
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2
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3.5k
views
Kernel Ridge Regression in R for Drug-Target Interaction
regression kernel ridge r
updated 7.6 years ago by • 0 • written 8.1 years ago by • 0
0
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2
replies
238
views
WGCNA: analysis of complex trait associations with regressions
Regression WGCNA
7 weeks ago • updated 6 weeks ago w.cookson • 0
0
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1
reply
1.5k
views
Choosing the kernel for SVM (regression) using rminer package
Regression Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
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1
reply
1.1k
views
question about limma fit differences?
Regression limma Regression limma
updated 20.3 years ago by 50k • written 20.3 years ago by ▴ 20
0
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2
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2.0k
views
UCSC data anomaly in 50638 transcript(s): the cds cumulative length is
Genetics GO Regression Cancer TranscriptDb Genetics GO Regression Cancer TranscriptDb
updated 10.0 years ago by ▴ 570 • written 10.0 years ago by 16k
0
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4
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2.5k
views
DESeq2 high fold change values for comparison of samples with zero counts
Regression DESeq DESeq2 Regression DESeq DESeq2
updated 10.3 years ago by 42k • written 10.3 years ago by ▴ 60
0
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1
reply
1.3k
views
Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
16.6 years ago Hervé Pagès 16k
0
votes
1
reply
1.6k
views
Support vector regression
Classification Regression Classification Regression
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ★ 13k
0
votes
1
reply
1.0k
views
GWASTools: quasi-/perfect linear separation
Regression
updated 9.7 years ago by ▴ 870 • written 9.7 years ago by ★ 13k
0
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1
reply
1.6k
views
[MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `
Coverage Regression edgeR MEDIPS Coverage Regression edgeR MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by ▴ 10
0
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1
reply
711
views
mean versus linear model?
Regression limma Regression limma
updated 20.4 years ago by ★ 6.0k • written 20.4 years ago by ▴ 340
0
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3
replies
8.9k
views
ggplot2 error
Regression Regression
10.3 years ago Alyaa Mahmoud ▴ 440
0
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2
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4.2k
views
edgeR choose the best model of GLM
Regression edgeR Regression edgeR
updated 11.2 years ago by 50k • written 11.2 years ago by ▴ 40
0
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1
reply
2.1k
views
Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 19.4 years ago by ▴ 360 • written 19.4 years ago by ▴ 620
0
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3
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1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
0
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3
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3.6k
views
lower.limits and upper.limits in glmnet
Regression Regression
updated 10.6 years ago by ▴ 60 • written 10.6 years ago by ▴ 370
8
votes
3
replies
6.9k
views
Removing batch effects with sva and combat using the sva package
Regression limma sva Regression limma sva
updated 12.4 years ago by ▴ 60 • written 12.4 years ago by ▴ 650
0
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1
reply
1.9k
views
maSigPro and "subscript out of bounds"
Normalization Regression maSigPro Normalization Regression maSigPro
updated 13.0 years ago by ▴ 240 • written 13.0 years ago by ★ 6.8k
1
vote
1
reply
7.1k
views
[LIMMA]lmFit with continuous predictor
Regression limma Regression limma
updated 11.8 years ago by ▴ 130 • written 11.9 years ago by ▴ 210
2
votes
2
replies
2.3k
views
[limma] [Rfit] [samr] Gene expression distribution using lmFit and eBayes
Microarray Regression Microarray Regression
updated 10.5 years ago by 50k • written 10.5 years ago by ▴ 30
0
votes
1
reply
1.6k
views
paired microarray samples
Regression limma beadarray Regression limma beadarray
updated 14.6 years ago by ★ 6.0k • written 14.6 years ago by ▴ 60
0
votes
1
reply
997
views
predict an ordinal response variable from high-throughput gene expression data
Microarray Regression Microarray Regression
updated 14.6 years ago by ▴ 30 • written 14.6 years ago by ★ 1.0k
0
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2
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926
views
Filter before? Filter after? With maanova
Regression probe maanova Regression probe maanova
updated 14.9 years ago by ★ 5.5k • written 14.9 years ago by ★ 1.0k
0
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1
reply
1.1k
views
Huber et al: Variance stabilization ...
Microarray Regression Microarray Regression
updated 21.3 years ago by ★ 13k • written 21.3 years ago by ▴ 60
0
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7
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1.3k
views
IRanges: interaction with model fitting
Regression IRanges Regression IRanges
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 6.5k
0
votes
2
replies
1.9k
views
how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
14.9 years ago Venkat Sundar ▴ 30
0
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2
replies
822
views
Newbe question
Regression Regression
12.8 years ago SimonNoël ▴ 450
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 12.7 years ago by 6.7k • written 12.7 years ago by ★ 4.2k
0
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2
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897
views
missing values in limma/contrasts.fit
Microarray Regression probe limma Microarray Regression probe limma
updated 14.4 years ago by ▴ 70 • written 14.4 years ago by 50k
0
votes
1
reply
1.0k
views
[R] lowess regression
Regression Regression
updated 11.7 years ago by ▴ 10 • written 11.7 years ago by ▴ 670
0
votes
2
replies
1.1k
views
Maanova & createdata
Regression maanova Regression maanova
updated 15.5 years ago by ▴ 450 • written 15.5 years ago by ★ 1.0k
0
votes
1
reply
976
views
batch effects and VSN
Normalization Regression vsn limma oligo Normalization Regression vsn limma oligo
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 330
0
votes
1
reply
2.4k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 15.4 years ago by ★ 2.3k • written 15.4 years ago by ▴ 130
0
votes
1
reply
740
views
Binary regression trees
Regression Regression
updated 19.0 years ago by ▴ 210 • written 19.0 years ago by ▴ 10
0
votes
2
replies
1.9k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 10.4 years ago by ▴ 570 • written 10.4 years ago by ▴ 20
0
votes
2
replies
956
views
Does old workspace work?
Regression probe gcrma PROcess maanova Regression probe gcrma PROcess maanova
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ★ 1.0k
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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