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Rsubread
•
reset
0
votes
0
replies
88
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
15 days ago
Dario Strbenac
★ 1.5k
0
votes
2
replies
264
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
5 weeks ago • updated 20 days ago
isaac.vock
• 0
2
votes
3
replies
259
views
Rsubread crashes Rstudio while alignment
Rsubjunc
Rsubread
updated 6 weeks ago by
Wei Shi
★ 3.6k • written 6 weeks ago by
thomas.heigl.ibk
• 0
0
votes
1
reply
186
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 7 weeks ago by
Gordon Smyth
50k • written 7 weeks ago by
Gerhard Thallinger
▴ 180
0
votes
0
replies
149
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts
Rsubread
9 weeks ago
chris2.a.white
• 0
1
vote
1
reply
275
views
featureCounts unable to assign long reads to one specific isoform
featureCounts
Rsubread
updated 9 weeks ago by
Wei Shi
★ 3.6k • written 3 months ago by
Alex
• 0
0
votes
0
replies
164
views
Unclear exon-exon connection after RSubjunc() usage
IGV
Rsubjunc
Rsubread
10 weeks ago
thomas.heigl.ibk
• 0
7
votes
28
replies
6.2k
views
Rsubread::featureCounts extremely slow on some annotations
rsubread
featurecounts
updated 3 months ago by
Gordon Smyth
50k • written 9.2 years ago by
Ryan C. Thompson
★ 7.9k
1
vote
1
reply
398
views
RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
Rsubread
updated 9 weeks ago by
Yang Liao
▴ 380 • written 3 months ago by
Joe Marturano
▴ 10
0
votes
4
replies
453
views
Adjusting featureCounts settings in Galaxy for miRNA overlaps
featureCounts
Rsubread
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
tjgray4
• 0
4
votes
6
replies
760
views
[BUG] Rsubread::featureCounts quirk in CORE files: different target list ordering for same target lists
featurecounts
Rsubread
3 months ago
isaac.vock
• 0
1
vote
2
replies
271
views
Problems with Feature counting
Rsubread
BAMfiles
GTFfile
3 months ago
mirjanakessler
• 0
0
votes
1
reply
324
views
Strange behaviour in Rsubread when trimming sequences leading to a change inthe order of the reads
Rsubread
updated 5 months ago by
Gordon Smyth
50k • written 5 months ago by
glopez
• 0
2
votes
2
replies
603
views
Long-read mode in featureCounts
Rsubread
LongRead
6 months ago
mmisak
• 0
0
votes
2
replies
1.3k
views
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
7 months ago
Gregory
• 0
0
votes
0
replies
294
views
Fatal error: Wrong thread calling 'RunFinalizers'
featureCount
Rsubread
HPC
7 months ago
kthapa
• 0
0
votes
2
replies
521
views
Rsubread: .bai file lacks data for `samtools idxstats`
Rsubread
8 months ago
Gerhard Thallinger
▴ 180
0
votes
0
replies
324
views
Rsubread subjunc reporting 255 kb introns with exon limits mapping to A-rich region
Rsubread
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
Cosmin Saveanu
• 0
2
votes
3
replies
695
views
Rsubread: subjunc() loads index repeatedly
Rsubread
10 months ago • updated 8 months ago
Gerhard Thallinger
▴ 180
0
votes
2
replies
618
views
R session aborts after running align function on Rsubread
Rsubread
Alignment
updated 9 months ago by
Wei Shi
★ 3.6k • written 9 months ago by
amanda.gutierrez
• 0
0
votes
2
replies
1.0k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData
Rsubread
mapping
featurecounts
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
vitoriastavis
• 0
0
votes
1
reply
494
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread
ensembldb
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Ya
• 0
1
vote
1
reply
674
views
featureCounts bug with unpaired reads
Rsubread
featureCounts
updated 9 months ago by
Yang Liao
▴ 380 • written 9 months ago by
StevenE.Strong
• 0
0
votes
2
replies
595
views
'Killed' error during RNAseq alignment
subjunc
data.frame
myExons
Rsubread
updated 10 months ago by
ATpoint
★ 4.1k • written 10 months ago by
Sukeerthi
• 0
1
vote
6
replies
1.8k
views
Rsubread - Error on buildindex - big ref sequence
Rsubread
updated 9 months ago by
Yang Liao
▴ 380 • written 4.2 years ago by
bryan.penning
• 0
2
votes
2
replies
1.6k
views
Running featureCounts() in 'IntersectionStrict' mode
rsubread
featurecounts
summarizeoverlaps
updated 5 weeks ago by
isaac.vock
• 0 • written 7.9 years ago by
Jon Manning
▴ 90
3
votes
16
replies
18k
views
featureCounts - paired-end data
featurecounts
rsubread
updated 10 months ago by
Robert
• 0 • written 9.0 years ago by
samuel collombet
▴ 140
27 results • Page
1 of 1
Recent ...
Replies
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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