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Sequencing
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0
votes
0
replies
1.4k
views
Experimental design for RNA-Seq
Sequencing
qPCR
Cancer
Sequencing
qPCR
Cancer
15.4 years ago
Jakob Hedegaard
▴ 170
0
votes
0
replies
979
views
Bioconductor Developer Meeting - Heidelberg 17./18. Nov 2010
Sequencing
Annotation
Sequencing
Annotation
15.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.5k
views
Two bioinformatics positions in Bordeaux, France
SNP
Sequencing
Genetics
Cancer
Breast
SNP
Sequencing
Genetics
Cancer
Breast
15.5 years ago
Audrey Kauffmann
▴ 110
0
votes
0
replies
1.5k
views
Computational Biology Positions at EMBL (Heidelberg)
Sequencing
Genetics
genomes
Sequencing
Genetics
genomes
15.6 years ago
Wolfgang Huber
★ 13k
0
votes
4
replies
1.5k
views
Query
Sequencing
Sequencing
updated 15.7 years ago by
Martin Morgan
25k • written 15.7 years ago by
Yogesh Kumar
▴ 10
0
votes
4
replies
2.0k
views
Converting data into MAlist to use in LIMMA
Sequencing
Microarray
Annotation
Normalization
affy
convert
Sequencing
Microarray
affy
updated 15.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 15.7 years ago by
Aubin-Horth Nadia
▴ 60
0
votes
0
replies
1.3k
views
stranded findOverlaps
Sequencing
Annotation
GO
rtracklayer
IRanges
genomeIntervals
Sequencing
Annotation
GO
15.7 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.7k
views
Distinguish Synonymous vs. Non-synonymous SNPs
Sequencing
Biostrings
biomaRt
Sequencing
Biostrings
biomaRt
15.7 years ago
Michael Dondrup
▴ 550
0
votes
0
replies
1.2k
views
2 post-doc and one PhD positions at the Bioinformatics and Genomics Department of the Centro de Investigaciones Príncipe Felipe, Valencia, Spain.
Sequencing
Sequencing
15.8 years ago
Ana Conesa
▴ 340
0
votes
0
replies
1.1k
views
Position for Computational Scientist at EMBL
Sequencing
Genetics
genomes
Sequencing
Genetics
genomes
15.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
970
views
BioC Course 27-29 Jan 10: Introduction to R and Bioconductor
Sequencing
Microarray
Preprocessing
Sequencing
Microarray
Preprocessing
15.8 years ago
Patrick Aboyoun
★ 1.6k
0
votes
1
reply
1.3k
views
European Developers' Meeting, 2010
Sequencing
Sequencing
updated 15.9 years ago by
Cass Johnston
▴ 10 • written 15.9 years ago by
Crispin Miller
★ 1.1k
0
votes
1
reply
826
views
how to compare 3 different array platforms by matchprobes?
Sequencing
probe
matchprobes
Sequencing
probe
matchprobes
updated 15.9 years ago by
Wolfgang Huber
★ 13k • written 15.9 years ago by
qian kui
▴ 10
0
votes
0
replies
814
views
Bioinformaticians for Next Gen Seq
Sequencing
Sequencing
15.9 years ago
Sudeshna Guha Neogi
▴ 10
0
votes
0
replies
998
views
Training course at EBI, Cambridge, UK, Feb 1-5
Sequencing
Microarray
Annotation
Normalization
Preprocessing
probe
Sequencing
Microarray
16.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
Job openings in Boston, MA, USA
Sequencing
Microarray
Cancer
Sequencing
Microarray
Cancer
16.0 years ago
Wittner, Ben
▴ 290
0
votes
0
replies
1.5k
views
Bioconductor 2.5 is released
Sequencing
miRNA
Microarray
qPCR
Annotation
Network
Bayesian
Regression
CGH
stam
Rintact
16.0 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.5k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing
Genetics
Classification
Cancer
PROcess
Sequencing
Genetics
Classification
16.0 years ago
Reek, J.
▴ 10
0
votes
1
reply
933
views
workshops?
Sequencing
Sequencing
updated 16.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.0 years ago by
Brian Moldover
▴ 30
0
votes
0
replies
1.4k
views
Job advertisement
Transcription
Sequencing
Microarray
Normalization
Pathways
PROcess
Transcription
Sequencing
16.1 years ago
Alexandre Kuhn
▴ 60
0
votes
0
replies
1.1k
views
BioC 2010 European Developers' meeting
Sequencing
Cancer
Sequencing
Cancer
16.1 years ago
Crispin Miller
★ 1.1k
0
votes
6
replies
1.5k
views
exon exon junction library for human
Sequencing
Sequencing
updated 16.2 years ago by
Steve Lianoglou
★ 13k • written 16.2 years ago by
shirley zhang
★ 1.0k
0
votes
0
replies
882
views
Call for papers and participants on Next Generation Sequencing (CAMDA 2009)
Sequencing
Sequencing
16.2 years ago
Pan Du
★ 1.2k
0
votes
10
replies
2.7k
views
Statistics for next-generation sequencing transcriptomics
Sequencing
SAGE
Sequencing
SAGE
updated 16.3 years ago by
Margaret Taub
▴ 10 • written 16.3 years ago by
michael watson IAH-C
★ 3.4k
0
votes
2
replies
1.3k
views
Fwd: edgeR with only 1 replicate?
Sequencing
SAGE
edgeR
Sequencing
SAGE
edgeR
updated 16.3 years ago by
Naomi Altman
★ 6.0k • written 16.3 years ago by
Jenny Drnevich
★ 2.0k
0
votes
0
replies
1.8k
views
JOB: Cancer Research UK - Cambridge Research Institute Bioinformatics Core
Sequencing
Microarray
Cancer
Sequencing
Microarray
Cancer
16.3 years ago
Mark Dunning
★ 1.1k
0
votes
0
replies
2.0k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
16.3 years ago
Joern Toedling
▴ 450
0
votes
0
replies
1.1k
views
Call for participants of CAMDA2009
Sequencing
Sequencing
16.5 years ago
Pan Du
★ 1.2k
0
votes
0
replies
2.2k
views
Post Doc position, Berlin Germany
Sequencing
Microarray
Proteomics
Pathways
Network
Cancer
Sequencing
Microarray
Proteomics
16.5 years ago
Paul Hammer
▴ 220
0
votes
0
replies
1.5k
views
Bioinformatics postdoc in Brussels
Sequencing
Epigenetics
Cancer
Breast
Sequencing
Epigenetics
Cancer
Breast
16.6 years ago
Vincent Detours
▴ 80
0
votes
3
replies
1.4k
views
other human genomes, other SNP sets?
Sequencing
BSgenome
SNPlocs
BSgenome
Sequencing
BSgenome
SNPlocs
BSgenome
16.6 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
847
views
Advanced Course in Analysis of Short Read Sequencing Data
Sequencing
Sequencing
16.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
821
views
R/BioC workshops in Southern California
Sequencing
Clustering
Sequencing
Clustering
16.7 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.3k
views
[JOB] National Cancer Institute, Bethesda, MD
Sequencing
miRNA
Microarray
Genetics
Cancer
Sequencing
miRNA
Microarray
Genetics
Cancer
16.7 years ago
Sean Davis
21k
0
votes
2
replies
1.2k
views
present/absent on 2-color oligo arrays
Sequencing
Microarray
Sequencing
Microarray
updated 16.7 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.7 years ago by
Naomi Altman
★ 6.0k
0
votes
1
reply
1.1k
views
present/absent on 2-color oligo arrays
Sequencing
Sequencing
updated 16.7 years ago by
Samuel Wuest
▴ 330 • written 16.7 years ago by
Naomi Altman
★ 6.0k
0
votes
2
replies
3.1k
views
BiomaRt and extracting genomic sequence
Sequencing
biomaRt
Sequencing
biomaRt
updated 16.7 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 16.8 years ago by
RS Illingworth
▴ 10
0
votes
12
replies
2.7k
views
Job offer at EMBL Heidelberg
Sequencing
Sequencing
updated 16.8 years ago by
Arteaga-Salas, Jose M
▴ 20 • written 16.8 years ago by
delhomme@embl.de
★ 1.2k
0
votes
1
reply
943
views
Reminder: Intermediate BioC Course 21-23 Jan 09
Sequencing
Microarray
genomes
Sequencing
Microarray
genomes
16.8 years ago
Patrick Aboyoun
★ 1.6k
0
votes
4
replies
1.5k
views
Course material for "Using Bioconductor for ChIP-seq experiments"
Sequencing
Cancer
BSgenome
annotate
Biostrings
BSgenome
Sequencing
Cancer
BSgenome
updated 16.9 years ago by
Werner Van Belle
▴ 10 • written 16.9 years ago by
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.4k
views
Postdoctoral scientist/programmer positions
Sequencing
Cancer
Sequencing
Cancer
17.0 years ago
Crispin Miller
★ 1.1k
0
votes
0
replies
1.3k
views
BIOINFORMATICIAN position available in Italy
Sequencing
Sequencing
17.0 years ago
rcaloger
▴ 500
0
votes
3
replies
2.0k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
17.0 years ago
Patrick Aboyoun
★ 1.6k
0
votes
1
reply
2.4k
views
Entrez Gene ID to Probe Set Name
aCGH
Sequencing
miRNA
Microarray
Annotation
Normalization
GO
Preprocessing
Visualization
updated 17.0 years ago by
Marc Carlson
★ 7.2k • written 17.0 years ago by
McGee, Monnie
▴ 300
0
votes
1
reply
794
views
R package to estimate aggregation of NGS reads
Sequencing
Sequencing
updated 17.1 years ago by
Martin Morgan
25k • written 17.1 years ago by
Ana Conesa
▴ 340
0
votes
1
reply
852
views
Bioconductor and sequencing
Sequencing
Cancer
Sequencing
Cancer
updated 17.1 years ago by
Ido M. Tamir
▴ 150 • written 17.1 years ago by
rgentleman
★ 5.5k
0
votes
0
replies
1.5k
views
New Bioconductor package: rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
rtracklayer
Sequencing
Annotation
CGH
GenomeGraphs
17.5 years ago
Michael Lawrence
▴ 620
0
votes
0
replies
1.5k
views
Two Computational Biology / Bioinformatics Positions, University of Cambridge, UK
Sequencing
Sequencing
17.5 years ago
Krys Kelly
▴ 270
0
votes
0
replies
1.3k
views
Postdoctoral Research @ Cold Spring Harbor Laboratory
Sequencing
Genetics
Cancer
Sequencing
Genetics
Cancer
17.6 years ago
Matthew Vaughn
▴ 30
0
votes
0
replies
1.1k
views
bioc-sig-sequencing: new list for Bioconductor high-throughput sequencing analysis
Sequencing
Sequencing
17.7 years ago
Martin Morgan
25k
308 results • Page
6 of 7
Recent ...
Replies
Answer: Issue with Soft-Thresholding in WGCNA
by
misty.chickadee.vckc
• 0
Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …
Comment: Interpretation of output of AffyRNAdeg and hist commands
by
debasainalsa
• 0
When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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