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Sequencing
•
reset
0
votes
0
replies
929
views
Erros in crlmm Re: SNP 6 chip
SNP
Sequencing
affy
oligo
xps
crlmm
SNP
Sequencing
affy
oligo
xps
crlmm
14.0 years ago
Benilton Carvalho
★ 4.3k
0
votes
7
replies
1.7k
views
SNP 6 chip
SNP
Sequencing
affy
SNP
Sequencing
affy
updated 14.0 years ago by
James W. MacDonald
68k • written 14.0 years ago by
John linux-user
▴ 210
0
votes
0
replies
1.3k
views
Postdoctoral position in biostatistics/bioinformatics/computational biology
Sequencing
Microarray
Sequencing
Microarray
14.0 years ago
Medvedovic, Mario medvedm
▴ 20
0
votes
1
reply
1.2k
views
Regarding subread vignette
Sequencing
Alignment
Rsubread
Sequencing
Alignment
Rsubread
14.0 years ago
Wei Shi
★ 3.6k
0
votes
0
replies
1.4k
views
[Job] Functional genomic analysis of cancer/RNAi screening
Transcription
Sequencing
Genetics
Pathways
Cancer
Prostate
Transcription
Sequencing
Cancer
14.0 years ago
Sean Davis
21k
0
votes
3
replies
1.8k
views
Chip-seq quality control
Sequencing
Sequencing
updated 14.1 years ago by
Ivan Gregoretti
▴ 310 • written 14.1 years ago by
Lucia Peixoto
▴ 330
0
votes
0
replies
1.9k
views
Postdoctoral positions at EMBL
Sequencing
Genetics
GO
Network
Cancer
genomes
Sequencing
Genetics
GO
Network
Cancer
14.1 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
2.1k
views
4 PhD positions in cancer computational biology
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
14.2 years ago
mattia pelizzola
▴ 200
0
votes
0
replies
1.4k
views
Bioinformatics position in CIAT, Colombia
Sequencing
Annotation
Sequencing
Annotation
14.2 years ago
Sarah Ayling
▴ 10
0
votes
0
replies
836
views
two-day conference "Statistical Analyses for Next Generation Sequencing"
Sequencing
Sequencing
14.2 years ago
Xiangqin Cui
▴ 20
0
votes
0
replies
1.1k
views
question about mt.maxT output (multtest)
Sequencing
Microarray
Category
Sequencing
Microarray
Category
14.4 years ago
Les Dethlefsen
▴ 20
0
votes
0
replies
1.3k
views
question/issue with multtest mt.maxT
Sequencing
Microarray
GUI
Category
Sequencing
Microarray
GUI
Category
14.4 years ago
Les Dethlefsen
▴ 20
0
votes
0
replies
1.0k
views
Statistical Bioinformatics Position In Oxford
Sequencing
Sequencing
14.4 years ago
Steve Taylor
▴ 280
0
votes
0
replies
1.1k
views
Job opening in Boston, USA
Sequencing
Microarray
Cancer
Sequencing
Microarray
Cancer
14.5 years ago
Wittner, Ben
▴ 290
0
votes
1
reply
1.3k
views
BioC in the cloud (was Re: [Bioc-devel] Bioconductor 2.8 is released)
Sequencing
Rgraphviz
Sequencing
Rgraphviz
updated 14.5 years ago by
Brad Chapman
▴ 20 • written 14.5 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.3k
views
DESeq - non-differential expression
Sequencing
miRNA
Genetics
DESeq
Sequencing
miRNA
Genetics
DESeq
updated 14.5 years ago by
Thomas J Hardcastle
▴ 180 • written 14.5 years ago by
Christophe Antoniewski
▴ 10
0
votes
3
replies
2.3k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP
Sequencing
miRNA
Microarray
Annotation
Normalization
Pathways
Preprocessing
Survival
updated 14.5 years ago by
Ivan Gregoretti
▴ 310 • written 14.5 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
4
replies
1.9k
views
Bioconductor 2.8 is released
SNP
Sequencing
miRNA
Microarray
Annotation
Normalization
Pathways
Preprocessing
Network
updated 14.5 years ago by
Ivan Gregoretti
▴ 310 • written 14.5 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
13
replies
3.6k
views
multiple hits with countOverlaps function
Sequencing
GenomicFeatures
Sequencing
GenomicFeatures
14.5 years ago
Wei Shi
★ 3.6k
0
votes
0
replies
1.1k
views
[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing
Microarray
Alignment
Annotation
Clustering
Cancer
Biostrings
AnnotationDbi
14.5 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.3k
views
Bioinformatics Post-doc in Melbourne
Sequencing
Sequencing
14.6 years ago
Alicia Oshlack
▴ 70
0
votes
3
replies
1.4k
views
Lapply for two GRanges objects?
Sequencing
Cancer
Sequencing
Cancer
updated 14.6 years ago by
Martin Morgan
25k • written 14.6 years ago by
wrighth
▴ 260
0
votes
0
replies
771
views
Open PhD position
Sequencing
Genetics
Sequencing
Genetics
14.6 years ago
Robinson, Peter
▴ 100
0
votes
8
replies
2.2k
views
Single nucleotide based RNAseq normalization with edgeR
Sequencing
RNASeq
Normalization
edgeR
Sequencing
RNASeq
Normalization
edgeR
updated 14.7 years ago by
Jens Georg
▴ 20 • written 14.7 years ago by
Gordon Smyth
53k
0
votes
0
replies
689
views
Single nucleotide based RNAseq normalization with edgeR?
Sequencing
Normalization
edgeR
Sequencing
Normalization
edgeR
14.7 years ago
Jens Georg
▴ 20
0
votes
0
replies
1.3k
views
Bioinformatics jobs -HT sequencing and more
Sequencing
Genetics
Sequencing
Genetics
14.8 years ago
Paul Leo
▴ 970
0
votes
1
reply
2.3k
views
DESeq with no replicates
Sequencing
miRNA
SmallRNA
DESeq
Sequencing
miRNA
SmallRNA
DESeq
updated 14.9 years ago by
Wolfgang Huber
★ 13k • written 14.9 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.0k
views
Accessing next gen sequence data remotely via biocondcutor
Sequencing
Rsamtools
Sequencing
Rsamtools
updated 14.9 years ago by
Martin Morgan
25k • written 14.9 years ago by
Ruppert Valentino
▴ 270
0
votes
0
replies
1.2k
views
Introductory course on GeneChip®Exon 1.0 ST & NGS microRNA data analysis Feb 2011
Sequencing
microRNA
Sequencing
microRNA
14.9 years ago
raffaele calogero
▴ 500
0
votes
9
replies
2.9k
views
SOLiD color space data
Sequencing
Sequencing
updated 14.9 years ago by
rcaloger
▴ 500 • written 14.9 years ago by
Neel Aluru
▴ 460
0
votes
0
replies
967
views
equiry about GAGE
Sequencing
gage
Sequencing
gage
14.9 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
1.8k
views
Writing table from DGEExact object (edgeR)
Sequencing
edgeR
Sequencing
edgeR
updated 14.9 years ago by
Mark Robinson
★ 1.1k • written 14.9 years ago by
Karen Sherwood
▴ 10
0
votes
2
replies
1.7k
views
New gage package: Generally Applicable Gene-set/Pathway Analysis
Sequencing
Microarray
Pathways
GO
Yeast
gage
Sequencing
Microarray
Pathways
GO
Yeast
15.0 years ago
Luo Weijun
★ 1.6k
0
votes
4
replies
1.9k
views
faster way to get differential calls from pileup?
SNP
Sequencing
PROcess
SNP
Sequencing
PROcess
updated 15.0 years ago by
Sean Davis
21k • written 15.0 years ago by
wrighth
▴ 260
0
votes
0
replies
1.5k
views
Job Posting: Scientific Programmer
Sequencing
Cancer
cdf
Sequencing
Cancer
cdf
15.0 years ago
Greg Finak
▴ 240
0
votes
1
reply
1.3k
views
ShortRead for sequencing data quality assessment
Sequencing
ShortRead
Sequencing
ShortRead
updated 15.1 years ago by
Valerie Obenchain
★ 6.8k • written 15.1 years ago by
heyi xiao
▴ 360
0
votes
3
replies
1.3k
views
help - where to start
Sequencing
Sequencing
updated 15.1 years ago by
Martin Morgan
25k • written 15.1 years ago by
Adrian Johnson
▴ 330
0
votes
0
replies
912
views
Course announcement: Statistical Methods for mRNA-Seq and ChIP-seq using Bioconductor
Sequencing
Normalization
Sequencing
Normalization
15.1 years ago
Joaquin Dopazo
▴ 10
0
votes
4
replies
1.8k
views
ShortRead for sequencing data quality assessment
Sequencing
ShortRead
Sequencing
ShortRead
15.1 years ago
heyi xiao
▴ 360
0
votes
0
replies
1.4k
views
Position for a Computational Biologist/Geneticist, Plant Sciences, Cambridge, UK
Sequencing
Genetics
Arabidopsis thaliana
Sequencing
Genetics
Arabidopsis thaliana
15.1 years ago
Krys Kelly
▴ 270
0
votes
0
replies
1.4k
views
Job vacancies, University of Cambridge, UK
Sequencing
Sequencing
15.2 years ago
Krys Kelly
▴ 270
0
votes
5
replies
2.7k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 15.2 years ago by
Alex Levitchi
▴ 30 • written 15.2 years ago by
Sean Davis
21k
0
votes
2
replies
2.2k
views
Bacterial genomics
Sequencing
Microarray
qPCR
genomes
Sequencing
Microarray
qPCR
genomes
updated 15.2 years ago by
Hervé Pagès
16k • written 15.2 years ago by
Mathieu Parent
▴ 30
0
votes
0
replies
947
views
Statistical Bioinformatician/Geneticist Position at Oxford, UK
Sequencing
Sequencing
15.2 years ago
Steve Taylor
▴ 280
0
votes
3
replies
1.6k
views
ShortRead QA
Sequencing
ShortRead
Sequencing
ShortRead
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Alex Gutteridge
▴ 650
0
votes
2
replies
1.2k
views
next-generation sequencing and embryogenisis
Sequencing
SAGE
Coverage
Sequencing
SAGE
Coverage
updated 15.3 years ago by
Steve Shen
▴ 330 • written 15.3 years ago by
Ziping Zhang
▴ 20
1
vote
0
replies
2.8k
views
dispersion in edgeR
Sequencing
edgeR
15.3 years ago • updated 3.4 years ago
Gordon Smyth
53k
0
votes
2
replies
2.7k
views
edgeR question tags per million
Sequencing
Sequencing
updated 15.4 years ago by
Mark Robinson
★ 1.1k • written 15.4 years ago by
David
▴ 860
0
votes
0
replies
1.0k
views
BioC 2010 Conference Update
Sequencing
SAGE
Genetics
Sequencing
SAGE
Genetics
15.4 years ago
Martin Morgan
25k
0
votes
0
replies
19k
views
1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
15.4 years ago
David Lyon
▴ 340
308 results • Page
5 of 7
Recent ...
Replies
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 10
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
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