Bioconductor SingleCellData

Showing : SingleCellData • reset

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906

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SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment

19 months ago Romina • 0

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1.6k

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biobase SingleCellData seurat SingleCell

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by NGS_enthusiast • 0

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782

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SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

19 months ago k1m ▴ 20

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596

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SingleCellData ComputationalBiology

12 months ago Chrysothemis ▴ 10

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1.8k

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SingleCellExperiment DropletUtils SingleCellData

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by msn ▴ 10

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345

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AnnotationHubSoftware SingleCellData annotationTools

updated 5 months ago by ATpoint ★ 4.0k • written 5 months ago by yw24418 • 0

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535

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SingleCell SingleCellData

updated 19 months ago by ATpoint ★ 4.0k • written 19 months ago by Romina • 0

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960

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SingleCellData splatter

updated 24 months ago by luke.zappia ▴ 50 • written 2.0 years ago by Fatima • 0

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663

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DropletUtils SingleCellData

updated 8 months ago by ATpoint ★ 4.0k • written 9 months ago by p.vlachou-efstathiou • 0

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480

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tidyverse R SingleCellExperiment SingleCellData

updated 4 months ago by daenerystargaryen56 • 0 • written 4 months ago by Sitapriya • 0

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783

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GSVA SingleCellData

updated 2.1 years ago by Robert Castelo ★ 3.3k • written 2.1 years ago by Amna • 0

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722

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DimensionReduction SingleCellData multiomics MachineLearning

16 months ago Diego's • 0

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890

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singleR SingleCellExperiment SingleCellData

10 months ago Matvii Mykhailichenko • 0

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252

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imcRtools SingleCellData imcdatasets SpatialWorkflow

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by Simon • 0

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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