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SpikeIn
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0
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908
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Spike-in normalization method in ATACseq
sperm
Drosophila_melanogaster
ATACSeq
Normalization
SpikeIn
updated 12 months ago by
ATpoint
★ 5.0k • written 12 months ago by
Katerina
• 0
0
votes
2
replies
662
views
Analysis of transcription inhibition with DESeq2
SpikeIn
DESeq2
Normalization
written 14 months ago by
ADopico
• 0
0
votes
1
reply
952
views
Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
SpikeIn
RUVSeq
DESeq2
RUV
updated 16 months ago by
Michael Love
43k • written 16 months ago by
Ειρήνη
• 0
0
votes
0
replies
514
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
18 months ago
Virangika
• 0
1
vote
2
replies
1.0k
views
DiffBind spike-in lib.sizes confusion
SpikeIn
DiffBind
2.7 years ago • updated 2.6 years ago
Weisheng
• 0
6
votes
2
replies
4.1k
views
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
DESeq2
SpikeIn
Normalization
DifferentialExpression
updated 2.7 years ago by
ATpoint
★ 5.0k • written 2.7 years ago by
kalavattam
▴ 10
0
votes
2
replies
2.9k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 18 months ago by
maria.soler
• 0 • written 2.8 years ago by
kalavattam
▴ 10
3
votes
4
replies
3.0k
views
RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
DiffBind
SpikeIn
Normalization
ChIP-seq
csaw
2.9 years ago • updated 2.8 years ago
spg
• 0
0
votes
0
replies
1.4k
views
DiffBind spike-in normalisation with varying amounts of spike-in chromatin
DiffBind
ChIPSeq
Normalization
SpikeIn
4.1 years ago
Drew
• 0
0
votes
0
replies
1.1k
views
Spike-In Cells for Normalization?
SpikeIn
SingleCell
4.2 years ago
mb1996
• 0
0
votes
2
replies
1.8k
views
Using both spike in and TMM normalizations in ChIP-seq samples
ChIPSeq
SpikeIn
edgeR
Normalization
4.3 years ago • updated 4.2 years ago
maria.soler
• 0
7
votes
12
replies
5.9k
views
Using edgeR and a spike-in to calculate absolute abundance
edgeR
SpikeIn
RNASeq
updated 2.1 years ago by
Miguel
• 0 • written 4.7 years ago by
robert.chen
• 0
1
vote
9
replies
4.7k
views
Spike-in normalization in EdgeR
CUTandRUN
edgeR
Normalization
SpikeIn
ChIPSeq
updated 2.9 years ago by
Bogdan
▴ 670 • written 5.0 years ago by
Hesh
▴ 10
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Possibly a combination: some change in the forum software that affects some accounts/configurations but not all [unblocked games][1] […
Answer: EuroBioC2023 abstract submission is open!
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It's obvious that the blogger hought on details. It is not only easy to read but also makes the content more rich and interesting.[1v1 …
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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