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SystemsBiology
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News:
Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor
Network
RNASeqData
SystemsBiology
10 months ago
info
▴ 10
4
votes
2
replies
1.9k
views
Is there any description available for KEGG Pathway Edge Types
KEGG
SystemsBiology
KEGGgraph
ontology
18 months ago
Wuschel
▴ 10
0
votes
0
replies
1.2k
views
Job:
Postdoctoral Researcher in the Computational Systems Pharmacology Research Group at University of Turku, Finland
systemsbiology
network analysis
drugvsdisease
Job
7.9 years ago
jing.tang
• 0
0
votes
0
replies
1.4k
views
Job:
Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc
bioinformatics
network analysis
australia
systemsbiology
Job
8.0 years ago
david.lynn
• 0
1
vote
2
replies
2.3k
views
Job:
Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics
systemsbiology
cancer
job
austria
Job
8.9 years ago • updated 8.7 years ago
heinrich.kovar
▴ 10
1
vote
0
replies
2.0k
views
Job:
Postdoctoral Research Fellow in Bioinformatics - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
bioinformatician job
rnaseq
statistics
systemsbiology
Job
9.0 years ago
Federico Marini
▴ 150
0
votes
0
replies
1.8k
views
Job:
Post-Doctoral Research Fellow - Patient Genomics Data Visualization
visualization
genomics
personalized medicine
systemsbiology
js
Job
9.1 years ago
Hamid Bolouri
▴ 50
0
votes
0
replies
1.7k
views
Job:
Research Associate (Postdoctoral) position at the MRC Cancer Unit, University of Cambridge, UK.
job
computational biology
genomics
cancer
systemsbiology
Job
9.5 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.5k
views
Job:
Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology
bioinformatics
position
Job
9.6 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.1k
views
RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology
Network
RCytoscape
SystemsBiology
Network
RCytoscape
10.3 years ago
Paul Shannon
▴ 750
0
votes
3
replies
1.3k
views
Adding Illumina GEO GPL IDs to IlluminaIDMapping?
SystemsBiology
lumi
SystemsBiology
lumi
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Pan Du
★ 1.2k
0
votes
0
replies
1.2k
views
SPIA, hacked to run with only selected pathways
SystemsBiology
Pathways
Cancer
SPIA
SystemsBiology
Pathways
Cancer
SPIA
14.4 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.8k
views
Median-Interquartile Normalization
Microarray
SystemsBiology
Annotation
GO
Preprocessing
Clustering
Cancer
Yeast
Organism
GO
16.5 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
1.0k
views
slow graph methods
SystemsBiology
graph
SystemsBiology
graph
updated 16.6 years ago by
Seth Falcon
★ 7.4k • written 16.6 years ago by
Martin Morgan
25k
0
votes
0
replies
895
views
biomaRt -> XML::addNode masks graph
SystemsBiology
Cancer
graph
biomaRt
SystemsBiology
Cancer
graph
biomaRt
16.7 years ago
Seth Falcon
★ 7.4k
0
votes
5
replies
1.3k
views
limma question: direct two-color design & modeling individual subject effects
SystemsBiology
Regression
probe
limma
SystemsBiology
Regression
probe
limma
updated 17.0 years ago by
Paul Shannon
★ 1.1k • written 17.0 years ago by
Gordon Smyth
50k
0
votes
0
replies
1.0k
views
RBGL, shortest paths, edge weights, and the new graph class
SystemsBiology
graph
RBGL
SystemsBiology
graph
RBGL
18.0 years ago
Seth Falcon
★ 7.4k
17 results • Page
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Recent ...
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Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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Gyan Prakash Mishra
▴ 10
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Gordon Smyth
50k
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WouterDeCoster
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Michael Love
42k
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Malcolm Cook
★ 1.6k
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