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Bioconductor teaching week
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EdgeR: Explaning dispersion types to newbies
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updated 5.9 years ago by
Aaron Lun
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Bioconductor-related papers -- special F1000Research collection for Bioc2016
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updated 8.1 years ago by
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▴ 10 • written 8.1 years ago by
Wolfgang Huber
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New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
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Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
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21 months ago
Andy Lynch
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Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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Laurent Gatto
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Maria Doyle
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23 months ago
Matthew Ritchie
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
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A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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