Showing : TimeSeriesExperiment • reset
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Proteomics-time series with repeated measures
Proteomics limma repeatedmeasures TimeSeriesExperiment
2.0 years ago proteome_AO • 0
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time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 13 months ago by ▴ 40 • written 2.1 years ago by ▴ 20
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Time serious analysis Wald test in results()
DESeq2 TimeSeriesExperiment
updated 2.1 years ago by 42k • written 2.1 years ago by • 0
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Comparison between treatment timepoints in a single timeseries (control is first timepoint)
DESeq2 single-timeseries TimeSeriesExperiment
updated 2.1 years ago by 42k • written 2.2 years ago by • 0
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Time-series analyses of a multifactor design with DESeq2
DESeq2 MultipleFactors TimeSeriesExperiment
updated 2.2 years ago by 42k • written 2.2 years ago by • 0
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937
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Deseq2 contrasts and design for paired analysis
TimeSeriesExperiment RNASeq design DESeq2
updated 2.9 years ago by 42k • written 2.9 years ago by • 0
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limma: pvalues for coefficients topTable
TimeSeriesExperiment Regression top limma
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
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DESeq2 time course and dosage response
LRT Design DESeq2 doseResponse TimeSeriesExperiment
updated 3.2 years ago by 42k • written 3.2 years ago by • 0
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934
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Time series analysis - DESeq2
TimeSeriesExperiment
updated 3.5 years ago by 42k • written 3.5 years ago by ▴ 10
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Job: Biostatistics Research Associate, York, UK
QTL fourier TimeSeriesExperiment timecoursedata
3.6 years ago Daphne • 0
10 results • Page 1 of 1
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Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load by andrew.gibbons • 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0
These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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