Bioconductor TimeSeriesExperiment

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1.2k

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Proteomics limma repeatedmeasures TimeSeriesExperiment

2.3 years ago • updated 2.2 years ago proteome_AO • 0

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2.4k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 16 months ago by jacorvar ▴ 40 • written 2.3 years ago by eraldagjika ▴ 20

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832

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DESeq2 TimeSeriesExperiment

updated 2.3 years ago by Michael Love 43k • written 2.4 years ago by Jason • 0

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1.1k

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DESeq2 single-timeseries TimeSeriesExperiment

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by Jigyasa • 0

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849

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by Maria • 0

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977

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TimeSeriesExperiment RNASeq design DESeq2

updated 3.2 years ago by Michael Love 43k • written 3.2 years ago by Kesava • 0

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1.0k

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TimeSeriesExperiment Regression top limma

updated 3.4 years ago by James W. MacDonald 67k • written 3.4 years ago by Eleni • 0

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2.2k

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by Mari • 0

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969

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TimeSeriesExperiment

updated 3.7 years ago by Michael Love 43k • written 3.7 years ago by curiousmind007 ▴ 10

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1.2k

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QTL fourier TimeSeriesExperiment timecoursedata

3.8 years ago Daphne • 0

10 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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