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Topaseq
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Running deprecated packages
ToPASeq
Deprecation
2.5 years ago
pgauthi1
• 0
0
votes
1
reply
835
views
SPIA function error in ToPASeq
topaseq
updated 6.4 years ago by
Gordon Smyth
51k • written 6.4 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.1k
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.6 years ago
fawazfebin
▴ 60
0
votes
1
reply
1.1k
views
Problem in ToPASeq installation
topaseq
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.8k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.8 years ago
jan.soderman
• 0
0
votes
1
reply
984
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 7.9 years ago by
theobroma22
▴ 10 • written 7.9 years ago by
rubi
▴ 110
1
vote
2
replies
1.5k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.5 years ago
saamar.rajput
• 0
7 results • Page
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Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
by
dseauer
• 0
Thank you so much for all of your help! I really appreciate it!
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
by
Gordon Smyth
51k
Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …
Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
by
dseauer
• 0
Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…
Comment: Is it possible to parallelise saveHDF5SummarizedExperiment
by
Stefano Mangiola
▴ 20
Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
by
Jason
• 0
Any update on the resolution to this? I'm having the same issue with another species.
Votes
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
biomaRt rnorvegicus_gene_ensembl not available anymore
A: Does edgeR need to specify reference group?
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