Bioconductor Topaseq

Showing : Topaseq • reset

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1.3k

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ToPASeq Deprecation

3.7 years ago pgauthi1 • 0

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1.1k

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topaseq

updated 7.6 years ago by Gordon Smyth 53k • written 7.6 years ago by Aditya Saxena ▴ 10

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1.3k

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ToPASeq SPIA pathway analysis R

7.8 years ago fawazfebin ▴ 60

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1.4k

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topaseq

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Aditya Saxena ▴ 10

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2.0k

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installation package installation topaseq igraph LD_LIBRARY_PATH

9.0 years ago jan.soderman • 0

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1.2k

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ToPASeq

updated 9.1 years ago by theobroma22 ▴ 10 • written 9.1 years ago by rubi ▴ 110

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1.7k

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rnaseq Topaseq

9.7 years ago saamar.rajput • 0

7 results • Page 1 of 1

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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k

Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …

Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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