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Topaseq
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0
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706
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Running deprecated packages
ToPASeq
Deprecation
2.0 years ago
pgauthi1
• 0
0
votes
1
reply
709
views
SPIA function error in ToPASeq
topaseq
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
936
views
SPIA function error in ToPASeq
ToPASeq
SPIA
pathway analysis
R
6.1 years ago
fawazfebin
▴ 60
0
votes
1
reply
925
views
Problem in ToPASeq installation
topaseq
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
7.3 years ago
jan.soderman
• 0
0
votes
1
reply
858
views
Supplying ToPASeq a list of fold changes and their associated p-values
ToPASeq
updated 7.3 years ago by
theobroma22
▴ 10 • written 7.3 years ago by
rubi
▴ 110
1
vote
2
replies
1.3k
views
Normalized count or Count data for ToPASeq package
rnaseq
Topaseq
8.0 years ago
saamar.rajput
• 0
7 results • Page
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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