Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
TxDB
•
reset
0
votes
2
replies
1.4k
views
how to get transcript annotation (unique)
txdb
9.4 years ago
KB
▴ 50
9
votes
4
replies
4.1k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb
txdb.hsapiens.ucsc.hg19.knowngene
txdb.hsapiens.ucsc.hg38.knowngene
org.hs.eg.db
annotation
9.4 years ago
enricoferrero
▴ 680
0
votes
0
replies
1.3k
views
extractUpstreamSeqs with custom genome, no gene_id shown
genomicranges
txdb
genomicfeatures
featureextraction
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
wd
▴ 30
4
votes
4
replies
2.5k
views
Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.Hsapiens.UCSC.hg38.knownGene?
homo.sapiens
txdb
annotation
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
enricoferrero
▴ 680
0
votes
1
reply
1.6k
views
How to find index position of desired feature_by in TxDb granges?
granges
txdb
genomicfeatures
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
vinod.acear
▴ 50
2
votes
2
replies
1.7k
views
How to rename seqlevels style (I, II, III, ...,XVI, Mito to 1,2,3,...16, 17.) in txdb granges?
renameSeqlevels
mapSeqlevels
grangeslist
granges
txdb
9.6 years ago
vinod.acear
▴ 50
1
vote
6
replies
2.4k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
sekawaiwai2006
▴ 20
0
votes
3
replies
1.9k
views
extracting promoter region error for A.thaliana
promoter region
txdb
updated 9.7 years ago by
Martin Morgan
25k • written 9.7 years ago by
sekawaiwai2006
▴ 20
4
votes
7
replies
3.4k
views
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
makeTxDbFromBiomart
genomicfeatures
txdb
biomart
updated 9.9 years ago by
James W. MacDonald
68k • written 9.9 years ago by
vinod.acear
▴ 50
0
votes
4
replies
1.8k
views
threeUTRsByTranscript appears to not work after invoking setter seqlevelsStyle
txdb
threeutrsbytranscript
seqlevelsstyle
seqlevels
10.0 years ago
Robert K. Bradley
▴ 40
0
votes
3
replies
1.7k
views
possible conflict between renameSeqLevels (TxDb) and isActiveSeq (TxDb)
bug
txdb
genomicfeatures
10.1 years ago • updated 10.0 years ago
Robert K. Bradley
▴ 40
0
votes
2
replies
1.3k
views
renamed seqlevels (TxDb) don't persist through a save-load cycle
GenomicFeatures
TxDb
10.1 years ago • updated 10.0 years ago
Robert K. Bradley
▴ 40
2
votes
6
replies
3.1k
views
Working with Arabidopsis Databases
bsgenome
biomart
getPromoterSeq
txdb
10.1 years ago
oliwindram
▴ 10
0
votes
2
replies
2.7k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 10.3 years ago by
Hervé Pagès
16k • written 10.3 years ago by
yacine.badis
• 0
8
votes
16
replies
3.7k
views
Setting package name in makeTxDbPackage
genomicfeatures
txdb
updated 10.3 years ago by
Marc Carlson
★ 7.2k • written 10.4 years ago by
Diego Diez
▴ 760
2
votes
2
replies
1.7k
views
Setting genome information on a TxDb object
genomicfeatures
txdb
updated 10.4 years ago by
Hervé Pagès
16k • written 10.4 years ago by
Diego Diez
▴ 760
3
votes
3
replies
4.4k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller
installation
TxDb
updated 10.7 years ago by
Marc Carlson
★ 7.2k • written 10.7 years ago by
Laurent Gatto
1.6k
67 results • Page
2 of 2
Recent ...
Replies
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexecutor4
• 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Guangchuang Yu
★ 1.2k
Popular Question
to
Paulito
• 0
Popular Question
to
geneprophet
• 0
Popular Question
to
Hervé Pagès
16k
Locations
• All
The city by the bay,
7 hours ago
Pittsburgh, United States,
7 hours ago
WEHI, Melbourne, Australia,
7 hours ago
WEHI, Melbourne, Australia,
9 hours ago
Italy,
9 hours ago
Traffic: 529 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6