Bioconductor TxDb

Showing : TxDb • reset

votes

replies

1.5k

views

txdb

9.7 years ago KB ▴ 50

votes

replies

4.2k

views

txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

9.7 years ago enricoferrero ▴ 680

votes

replies

1.4k

views

genomicranges txdb genomicfeatures featureextraction

updated 9.7 years ago by Martin Morgan 25k • written 9.7 years ago by wd ▴ 30

votes

replies

2.6k

views

homo.sapiens txdb annotation

updated 9.7 years ago by Valerie Obenchain ★ 6.8k • written 9.7 years ago by enricoferrero ▴ 680

votes

1.7k

views

granges txdb genomicfeatures

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by vinod.acear ▴ 50

votes

replies

1.8k

views

renameSeqlevels mapSeqlevels grangeslist granges txdb

9.8 years ago vinod.acear ▴ 50

vote

replies

2.6k

views

bsgenome txdb promoter

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by sekawaiwai2006 ▴ 20

votes

replies

1.9k

views

promoter region txdb

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by sekawaiwai2006 ▴ 20

votes

replies

3.5k

views

makeTxDbFromBiomart genomicfeatures txdb biomart

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by vinod.acear ▴ 50

votes

replies

1.8k

views

txdb threeutrsbytranscript seqlevelsstyle seqlevels

10.2 years ago Robert K. Bradley ▴ 40

votes

replies

1.8k

views

bug txdb genomicfeatures

10.3 years ago • updated 10.2 years ago Robert K. Bradley ▴ 40

votes

replies

1.4k

views

GenomicFeatures TxDb

10.3 years ago Robert K. Bradley ▴ 40

votes

replies

3.3k

views

bsgenome biomart getPromoterSeq txdb

10.4 years ago oliwindram ▴ 10

votes

replies

2.7k

views

gtf TxDb maketxdbfromgff

updated 10.5 years ago by Hervé Pagès 16k • written 10.5 years ago by yacine.badis • 0

votes

replies

3.9k

views

genomicfeatures txdb

updated 10.6 years ago by Marc Carlson ★ 7.2k • written 10.6 years ago by Diego Diez ▴ 760

votes

replies

1.8k

views

genomicfeatures txdb

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by Diego Diez ▴ 760

votes

replies

4.5k

views

biocinstaller installation TxDb

updated 10.9 years ago by Marc Carlson ★ 7.2k • written 10.9 years ago by Laurent Gatto 1.6k

67 results • Page 2 of 2

Recent ...

Replies

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180