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Showing :
TxDb
•
reset
0
votes
5
replies
2.4k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
9.8 years ago
TimothéeFlutre
▴ 80
0
votes
2
replies
1.6k
views
how to get transcript annotation (unique)
txdb
9.8 years ago
KB
▴ 50
9
votes
4
replies
4.3k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb
txdb.hsapiens.ucsc.hg19.knowngene
txdb.hsapiens.ucsc.hg38.knowngene
org.hs.eg.db
annotation
9.9 years ago
enricoferrero
▴ 680
0
votes
0
replies
1.4k
views
extractUpstreamSeqs with custom genome, no gene_id shown
genomicranges
txdb
genomicfeatures
featureextraction
updated 9.9 years ago by
Martin Morgan
25k • written 9.9 years ago by
wd
▴ 30
4
votes
4
replies
2.6k
views
Why does Homo.sapiens import TxDb.Hsapiens.UCSC.hg19.knownGene instead of TxDb.Hsapiens.UCSC.hg38.knownGene?
homo.sapiens
txdb
annotation
updated 9.9 years ago by
Valerie Obenchain
★ 6.8k • written 9.9 years ago by
enricoferrero
▴ 680
0
votes
1
reply
1.7k
views
How to find index position of desired feature_by in TxDb granges?
granges
txdb
genomicfeatures
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
vinod.acear
▴ 50
2
votes
2
replies
1.9k
views
How to rename seqlevels style (I, II, III, ...,XVI, Mito to 1,2,3,...16, 17.) in txdb granges?
renameSeqlevels
mapSeqlevels
grangeslist
granges
txdb
10.0 years ago
vinod.acear
▴ 50
1
vote
6
replies
2.7k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
sekawaiwai2006
▴ 20
0
votes
3
replies
2.0k
views
extracting promoter region error for A.thaliana
promoter region
txdb
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
sekawaiwai2006
▴ 20
4
votes
7
replies
3.6k
views
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
makeTxDbFromBiomart
genomicfeatures
txdb
biomart
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
vinod.acear
▴ 50
0
votes
4
replies
1.9k
views
threeUTRsByTranscript appears to not work after invoking setter seqlevelsStyle
txdb
threeutrsbytranscript
seqlevelsstyle
seqlevels
10.4 years ago
Robert K. Bradley
▴ 40
0
votes
3
replies
1.9k
views
possible conflict between renameSeqLevels (TxDb) and isActiveSeq (TxDb)
bug
txdb
genomicfeatures
10.5 years ago • updated 10.4 years ago
Robert K. Bradley
▴ 40
0
votes
2
replies
1.4k
views
renamed seqlevels (TxDb) don't persist through a save-load cycle
GenomicFeatures
TxDb
10.5 years ago • updated 10.4 years ago
Robert K. Bradley
▴ 40
2
votes
6
replies
3.4k
views
Working with Arabidopsis Databases
bsgenome
biomart
getPromoterSeq
txdb
10.6 years ago
oliwindram
▴ 10
0
votes
2
replies
2.8k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 10.7 years ago by
Hervé Pagès
16k • written 10.7 years ago by
yacine.badis
• 0
8
votes
16
replies
4.1k
views
Setting package name in makeTxDbPackage
genomicfeatures
txdb
updated 10.8 years ago by
Marc Carlson
★ 7.2k • written 10.8 years ago by
Diego Diez
▴ 760
2
votes
2
replies
1.8k
views
Setting genome information on a TxDb object
genomicfeatures
txdb
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
Diego Diez
▴ 760
3
votes
3
replies
4.6k
views
Installation of TxDb.Hsapiens.UCSC.hg19.knownGene fails.
biocinstaller
installation
TxDb
updated 11.1 years ago by
Marc Carlson
★ 7.2k • written 11.1 years ago by
Laurent Gatto
1.6k
68 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
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by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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