Bioconductor TxDb

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2.4k

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genomicfeatures txdb maketxdbfromgff

9.8 years ago TimothéeFlutre ▴ 80

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1.6k

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txdb

9.8 years ago KB ▴ 50

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4.3k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

9.9 years ago enricoferrero ▴ 680

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1.4k

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genomicranges txdb genomicfeatures featureextraction

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by wd ▴ 30

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2.6k

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homo.sapiens txdb annotation

updated 9.9 years ago by Valerie Obenchain ★ 6.8k • written 9.9 years ago by enricoferrero ▴ 680

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1.7k

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granges txdb genomicfeatures

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by vinod.acear ▴ 50

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1.9k

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renameSeqlevels mapSeqlevels grangeslist granges txdb

10.0 years ago vinod.acear ▴ 50

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2.7k

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bsgenome txdb promoter

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by sekawaiwai2006 ▴ 20

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2.0k

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promoter region txdb

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by sekawaiwai2006 ▴ 20

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3.6k

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makeTxDbFromBiomart genomicfeatures txdb biomart

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by vinod.acear ▴ 50

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1.9k

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txdb threeutrsbytranscript seqlevelsstyle seqlevels

10.4 years ago Robert K. Bradley ▴ 40

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1.9k

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bug txdb genomicfeatures

10.5 years ago • updated 10.4 years ago Robert K. Bradley ▴ 40

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1.4k

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GenomicFeatures TxDb

10.5 years ago • updated 10.4 years ago Robert K. Bradley ▴ 40

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3.4k

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bsgenome biomart getPromoterSeq txdb

10.6 years ago oliwindram ▴ 10

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2.8k

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gtf TxDb maketxdbfromgff

updated 10.7 years ago by Hervé Pagès 16k • written 10.7 years ago by yacine.badis • 0

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4.1k

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genomicfeatures txdb

updated 10.8 years ago by Marc Carlson ★ 7.2k • written 10.8 years ago by Diego Diez ▴ 760

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1.8k

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genomicfeatures txdb

updated 10.8 years ago by Hervé Pagès 16k • written 10.8 years ago by Diego Diez ▴ 760

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4.6k

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biocinstaller installation TxDb

updated 11.1 years ago by Marc Carlson ★ 7.2k • written 11.1 years ago by Laurent Gatto 1.6k

68 results • Page 2 of 2

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Answer: bcftools norm Equivalent by a2a2hd42aa • 0

it lacks a direct, single function equivalent to bcftools norm for variant normalization. Bioinformaticians often bridge this gap by using …

Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0

Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…

Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20

Thanks both for this useful information.

Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k

SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0

Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …

Votes

Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?

Answer: Can sample-level weights be used when analysing GSVA scores in limma?

Comment: Can sample-level weights be used when analysing GSVA scores in limma?

Answer: Issue loading and downloading Bioconductor 3.22 packages after update

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