Bioconductor WALD

Showing : WALD • reset

votes

replies

20k

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deseq2 wald

updated 3.4 years ago by Michael Love 43k • written 10.1 years ago by deena ▴ 20

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1.5k

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deseq2 ribosome profiling wald lrt

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by indrik.wijaya ▴ 20

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1.3k

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DESeq2 wald stat

updated 2.5 years ago by Peter Hickey ▴ 750 • written 2.5 years ago by eve.olszanowski • 0

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3.0k

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deseq2 wald lrt genes significance

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by aziza ▴ 20

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2.0k

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etLRT WALD edgeR DESEq

updated 3.6 years ago by Michael Love 43k • written 3.6 years ago by aiswaryabioinfo • 0

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4.5k

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rnaseq deseq2 lrt wald differential gene expression

updated 3.0 years ago by chm • 0 • written 7.5 years ago by chrysanthi.taxiarchi12 • 0

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797

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DESeq2 LRT Wald

updated 7 months ago by James W. MacDonald 68k • written 7 months ago by Eric • 0

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2.2k

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deseq2 LRT WALD

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by annesoalvarez • 0

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1.3k

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GENESIS zscore wald

updated 5.4 years ago by Stephanie M. Gogarten ▴ 890 • written 5.5 years ago by lassana.a.samarakoon ▴ 10

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969

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deseq2 LRT wald

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by jnaviapelaez ▴ 10

10 results • Page 1 of 1

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Comment: Issue with DECIPHER::IdTaxa by Daniel • 0

The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

I generally recommend `block=individual` for unbalanced designs, to recover information from incomplete blocks. I would only be disuaded fr…

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Devin ▴ 10

Thank you, Gordon, for your responses to all of my questions. For analysis A), in the case when a patient has either a missing timepoint or…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thanks Michael. Just out of curiosity, would you also use the same technique for things like clustering analysis or when looking at the abn…

Comment: GAGE kegg.gsets() self-signed certificate error by Lucas • 0

Hello, I ended up solving the issue by using the first strategy: Disable the SSL certificate Verification. I used the following code to …

Votes

Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with

Answer: Using TPM from tximport of Salmon output for singscore

Comment: Using TPM from tximport of Salmon output for singscore

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