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News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.6 years ago • updated 2.0 years ago
shepherl
3.9k
7
votes
4
replies
2.2k
views
Start to End RNA-Seq with R Bioconductor
Bioconductor
Workflow
updated 2.3 years ago by
Gordon Smyth
50k • written 2.3 years ago by
sarastew1994
• 0
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.4 years ago • updated 3.0 years ago
shepherl
3.9k
0
votes
2
replies
797
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 3.7 years ago by
shepherl
3.9k • written 3.7 years ago by
gnanaprakash.s
• 0
1
vote
3
replies
773
views
typo in rnaseqGene workflow vignette.
rnaseqGene
workflow
deseq2
updated 4.3 years ago by
Michael Love
42k • written 4.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
7
replies
3.0k
views
Issue installing RNA-seq workflow
software error
deseq2
workflow
rnaseqGene
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
pavan-bioconductor
• 0
2
votes
3
replies
1.1k
views
RNA-Seq Workflow Example (not "airway") for R
RNA-Seq
Workflow
updated 4.9 years ago by
Gordon Smyth
50k • written 4.9 years ago by
detroit.drive
• 0
7 results • Page
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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