Showing : affy • reset
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1.3k
views
Ranking genes according to tissue specificity
probe affy gcrma probe affy gcrma
18.6 years ago Cei Abreu-Goodger ▴ 830
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3
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2.3k
views
Can't get RCurl...
GO Survival annotate genefilter affy graph limma GOstats biomaRt Category affycoretools
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 2.2k
0
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1
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1.3k
views
lmfit zero genes fit model
Normalization affy limma Normalization affy limma
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 20
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3
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1.1k
views
Accessing SD values from CEL files
affy affy
updated 18.6 years ago by ★ 4.1k • written 18.6 years ago by ▴ 30
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3
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1.5k
views
biomaRt : multiple entrezgene ids to one affy id?
affy affy
updated 18.6 years ago by 21k • written 18.6 years ago by ★ 1.2k
0
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1
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1.0k
views
Annotating HGU133plus2 genes with number of coding changes
Annotation affy Annotation affy
updated 18.6 years ago by ▴ 580 • written 18.6 years ago by ▴ 320
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10
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2.2k
views
biomaRt manual
affy convert biomaRt affy convert biomaRt
updated 18.6 years ago by ★ 6.5k • written 18.6 years ago by ★ 1.2k
0
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1
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1.3k
views
topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 18.6 years ago by 53k • written 18.6 years ago by ★ 2.2k
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1
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1.7k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 2.2k
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1.3k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.6 years ago Dick Beyer ★ 1.4k
0
votes
6
replies
1.7k
views
exonmap install
affy exonmap affy exonmap
updated 18.6 years ago by 68k • written 18.6 years ago by ★ 1.4k
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0
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625
views
ANN:xy2i and i2xy to be deprecated
Microarray Cancer cdf affy Microarray Cancer cdf affy
18.6 years ago James W. MacDonald 68k
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0
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1.2k
views
Technical replicates in limma
probe affy limma probe affy limma
18.6 years ago Steve Taylor ▴ 100
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1
reply
787
views
combineAffyBatch problem
cdf affy cdf affy
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ▴ 10
0
votes
1
reply
929
views
how to enlarge memory
affy affy
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 130
0
votes
1
reply
1.1k
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ★ 1.3k
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0
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1.2k
views
What is a good method for analyzing differential expression from Illumina BeadStudio summary data?
Normalization GO affy vsn limma beadarray lumi Normalization GO affy vsn limma lumi
18.7 years ago Gordon Smyth 53k
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1
reply
1.3k
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ★ 1.3k
0
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3
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1.7k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 18.7 years ago by ▴ 870 • written 18.7 years ago by ▴ 20
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1
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1.4k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 60
0
votes
3
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1.4k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.8 years ago by ★ 1.1k • written 18.8 years ago by ▴ 270
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votes
2
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2.0k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
18.8 years ago Mark W Kimpel ▴ 830
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votes
8
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2.3k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 2.2k
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0
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1.2k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.8 years ago Wu, Xiwei ▴ 350
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1
reply
1.5k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 300
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1
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1.7k
views
beadarray and BeadStudio v.2.3.41
Biobase affy affyio beadarray Biobase affy affyio beadarray
updated 18.8 years ago by ▴ 320 • written 18.8 years ago by ▴ 70
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4
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1.8k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ▴ 830
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0
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1.2k
views
Analysis with MBNI re-mapped (custom) CDF files
Microarray Clustering cdf probe affy affyPLM mmgmos Microarray Clustering cdf probe
18.8 years ago Richard Pearson ▴ 390
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0
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1.5k
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Normalization Preprocessing probe affy Normalization Preprocessing probe affy
18.8 years ago Ben Bolstad ★ 1.2k
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0
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972
views
dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
18.8 years ago Henrik Bengtsson ★ 2.4k
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1
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1.5k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 320
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891
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Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
18.8 years ago Manhong Dai ▴ 200
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4
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1.1k
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localization of mm values in affybatch exprs matrix
affy affy
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 80
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0
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877
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what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
18.8 years ago Betty Gilbert ▴ 50
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1
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2.2k
views
using simpleaffy incorrectly, or is there a problem with the read.affy function?
Microarray Survival Cancer genefilter affy simpleaffy affyio Microarray Survival Cancer
18.8 years ago k. brand ▴ 420
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4
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1.9k
views
Problems with the size of the plots obtained with AffyPLM
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 18.8 years ago by ▴ 550 • written 18.8 years ago by ▴ 350
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832
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[Bioc] Removing outlier/masked probes and gcRMA
cdf affy gcrma cdf affy gcrma
18.8 years ago Amy Mikhail ▴ 460
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votes
2
replies
999
views
outdated version of 'affy' in biocLite ?
affy affy
updated 18.8 years ago by 16k • written 18.8 years ago by ▴ 40
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2
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1.6k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ▴ 50
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0
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760
views
beadarray: problem with reading in Bead Summary Data
Biobase affy affyio beadarray Biobase affy affyio beadarray
18.9 years ago Perry Moerland ▴ 130
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0
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1.4k
views
flagging spots in marray
aCGH Microarray Normalization GO Cancer Biobase annotate genefilter affy affydata limma
18.9 years ago Gordon Smyth 53k
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0
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1.1k
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.9 years ago Charlyn Suarez ▴ 10
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votes
2
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1.9k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 890
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0
replies
832
views
HGU133 spike-in
probe affy probe affy
18.9 years ago Talloen, Willem [PRDBE] ▴ 40
0
votes
11
replies
3.4k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 18.9 years ago by ▴ 10 • written 18.9 years ago by ★ 2.2k
0
votes
2
replies
1.2k
views
R-2.4.0/bioconductor/darwin kernel version problem
Biobase affy Biobase affy
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 70
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1
reply
1.1k
views
AffyRNAdeg: "degradation" or "digestion"?
affy PROcess affy PROcess
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by 53k
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10
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2.1k
views
problems with gcrma just.gcrma
mgu74av2 affy gcrma mgu74av2 affy gcrma
18.9 years ago Elisabetta Manduchi ▴ 160
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votes
10
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2.6k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 18.9 years ago by ▴ 460 • written 19.0 years ago by ▴ 70
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2
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1.6k
views
problems with affy function indexProbes on Mac
affy made4 affy made4
updated 19.0 years ago by 25k • written 19.0 years ago by ★ 2.2k
1,805 results • Page 19 of 37
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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