Showing : affy • reset
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1.2k
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problem with CoCiteStats in bioC 1.8
cdf reposTools affy CoCiteStats affyio cdf reposTools affy CoCiteStats affyio
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 890
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votes
0
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846
views
justGCRMA error in BioC 1.8
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
19.5 years ago echang4@life.uiuc.edu ▴ 110
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0
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974
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
19.5 years ago Justin Borevitz ▴ 170
0
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4
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1.3k
views
U133A probe sequences...?
probe affy probe affy
updated 19.6 years ago by ▴ 200 • written 19.6 years ago by ▴ 310
0
votes
3
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1.8k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 19.6 years ago by ▴ 70 • written 19.6 years ago by ★ 2.2k
0
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1
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1.0k
views
yet another question on technical replicates...
affy affy
updated 19.6 years ago by 68k • written 19.6 years ago by ▴ 30
0
votes
2
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1.2k
views
affy package and porcine arrays
cdf affy cdf affy
19.6 years ago David Carter ▴ 50
0
votes
0
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625
views
request for gtype_cel_to_pq
affy affy
19.6 years ago Dick Beyer ★ 1.4k
0
votes
0
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1.6k
views
Problems using text to subset array information from anexpression set
Cancer cdf reposTools affy PROcess Cancer cdf reposTools affy PROcess
19.6 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
3
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2.8k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 19.6 years ago by ★ 1.9k • written 19.6 years ago by 53k
0
votes
4
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1.8k
views
Problems using text to subset array information from an expression set
cdf reposTools affy PROcess cdf reposTools affy PROcess
updated 19.6 years ago by ★ 4.3k • written 19.6 years ago by ▴ 110
0
votes
1
reply
877
views
cross-species affy analysis
affy affy
updated 19.6 years ago by 21k • written 19.6 years ago by ▴ 310
0
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2
replies
986
views
GCRMA-Background
affy affy
updated 19.6 years ago by ▴ 200 • written 19.6 years ago by ▴ 490
0
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1
reply
809
views
affy package and porcine arrays
cdf affy cdf affy
updated 19.6 years ago by ★ 6.5k • written 19.6 years ago by ▴ 50
0
votes
3
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1.4k
views
Envir. drosgenome1, GENENAME not defined?
GO drosgenome1 cdf annotate affy GO drosgenome1 cdf annotate affy
updated 19.6 years ago by ▴ 780 • written 19.6 years ago by ▴ 270
0
votes
0
replies
955
views
lost inherent methods of hist() for AffyBatch objects
cdf Biobase affy cdf Biobase affy
19.7 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
571
views
S. Cerevisiae Annotations Hints ?
affy affy
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 540
0
votes
1
reply
910
views
C entry point "ReadHeader" not in DLL for package "affy"
Biobase affy affyio Biobase affy affyio
updated 19.7 years ago by ★ 1.2k • written 19.7 years ago by ▴ 890
0
votes
1
reply
1.1k
views
Calculating signal value implemented in Microarray Suite Version 5 using affy
Microarray affy Microarray affy
updated 19.7 years ago by ★ 2.2k • written 19.7 years ago by ▴ 270
0
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4
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1.3k
views
Time course....makeConstrasts()
affy limma affy limma
19.7 years ago Khan, Sohail ▴ 490
0
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0
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770
views
Obtaining values like those from .exp files
Microarray affy simpleaffy Microarray affy simpleaffy
19.7 years ago Ruppert Valentino ▴ 270
0
votes
0
replies
857
views
Scaling Factor for Affymetrix chips
affy gcrma simpleaffy affy gcrma simpleaffy
19.7 years ago Jacky Pallas ▴ 10
0
votes
1
reply
941
views
Scaling Factor for Affymetrix chips.
affy gcrma affy gcrma
updated 19.7 years ago by ▴ 230 • written 19.7 years ago by ▴ 490
0
votes
0
replies
804
views
Fwd: Re: Scaling Factor for Affymetrix chips.
GO probe affy gcrma GO probe affy gcrma
19.7 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
663
views
Conversion of affymetrix annotation environment to matrix
GO affy convert GO affy convert
updated 19.7 years ago by ★ 13k • written 19.7 years ago by ★ 3.4k
0
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0
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1.3k
views
Error with CDF environment when using combineAffyBatch of pac kage matchprobes - mas5
Normalization cdf affy matchprobes Normalization cdf affy matchprobes
19.7 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
1
reply
1.3k
views
Issues with BioC GO annotations and NetAffx
Annotation GO probe affy PROcess GOstats Category Annotation GO probe affy PROcess
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 110
0
votes
2
replies
2.0k
views
Error with CDF environment when using combineAffyBatch of package matchprobes
cdf affy matchprobes cdf affy matchprobes
updated 19.7 years ago by ★ 13k • written 19.7 years ago by ▴ 270
0
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0
replies
890
views
MAS5 present/absent calls
affy affy
19.7 years ago Eric Blanc ▴ 30
0
votes
1
reply
936
views
Unable to get expression-values from cel-files of yeast
Yeast cdf affy Yeast cdf affy
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 10
0
votes
12
replies
2.9k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
19.7 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.5k
views
Filter on Fold Change
genefilter affy gcrma genefilter affy gcrma
updated 19.7 years ago by ★ 1.0k • written 19.7 years ago by ▴ 110
0
votes
6
replies
2.0k
views
RNA degradation tends & options for analysis
affy limma gcrma affycoretools affy limma gcrma affycoretools
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 20
0
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2
replies
1.4k
views
List significant genes on a GO table
GO affy GO affy
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 110
0
votes
2
replies
973
views
missing probeids in mu11ksuba metadata
mu11ksuba affy mu11ksuba affy
updated 19.7 years ago by ▴ 780 • written 19.7 years ago by ★ 1.4k
0
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13
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2.8k
views
Invalid fold-filter
probe affy probe affy
updated 19.7 years ago by ★ 1.0k • written 19.7 years ago by ▴ 110
0
votes
3
replies
3.1k
views
Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.7 years ago McGee, Monnie ▴ 300
0
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1
reply
1.2k
views
Differences: mas5/mas5calls vs. call.expr/pairwise.comparison
affy simpleaffy affy simpleaffy
19.7 years ago Benjamin Otto ▴ 830
0
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1
reply
1.3k
views
Affy Package - MAplot Function help needed...
affy affy
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 20
0
votes
1
reply
1.2k
views
GEOquery & GDS2eSet error
Annotation Cancer Breast Biobase affy limma AnnBuilder GEOquery Annotation Cancer Breast
updated 19.8 years ago by 21k • written 19.8 years ago by ▴ 300
0
votes
2
replies
995
views
GCRMA and background
probe affy gcrma probe affy gcrma
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 460
0
votes
2
replies
1.5k
views
continued problems with ReadAffy
Biobase affy Biobase affy
19.8 years ago Kimpel, Mark W ▴ 890
0
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0
replies
1.0k
views
problems with hgu133a2?
hgu133a2 probe affy hgu133a2 probe affy
19.8 years ago Dick Beyer ★ 1.4k
0
votes
6
replies
1.7k
views
affy chips' quality control question
affy affy
19.8 years ago Ren Na ▴ 250
0
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2
replies
1.3k
views
justRMA using incorrect default cdf
GO Survival rat2302 cdf annotate genefilter affy limma affycoretools GO Survival cdf
19.8 years ago Kimpel, Mark W ▴ 890
0
votes
1
reply
888
views
Differential Gene Expression using limma
affy affy
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 30
0
votes
1
reply
826
views
justRMA/GCRMA and alternative cdfs
Microarray Cancer cdf probe affy Microarray Cancer cdf probe affy
19.8 years ago James W. MacDonald 68k
0
votes
1
reply
667
views
justRMA with custom cdfs
affy affy
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 890
0
votes
8
replies
2.6k
views
Biological replication (was RNA degradation problem)
Normalization probe affy affyPLM Normalization probe affy affyPLM
19.8 years ago Naomi Altman ★ 6.0k
0
votes
2
replies
979
views
RMA background adjustment implementation in affy
affy affy
updated 19.8 years ago by ★ 1.2k • written 19.8 years ago by ▴ 10
1,805 results • Page 22 of 37
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Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
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