Showing : affyplm • reset
1
vote
1
reply
999
views
affyPLM boxplots for subset of samples
affyPLM
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 360
1
vote
1
reply
2.3k
views
Computing NUSE and RLE scores
affyPLM RLE NUSE
updated 9.2 years ago by 21k • written 9.2 years ago by ▴ 10
0
votes
0
replies
1.2k
views
affy packages on Linux doesn't get installed
DynDoc tkWidgets affy affyPLM DynDoc tkWidgets affy affyPLM
20.5 years ago juliab@stat.berkeley.edu ▴ 10
0
votes
0
replies
848
views
Quantile Normalization on mice data
affyPLM affyPLM
20.2 years ago Yen Lin Chia ▴ 50
0
votes
2
replies
1.1k
views
AffyPLM
affyPLM affyPLM
updated 20.2 years ago by ▴ 940 • written 20.2 years ago by ▴ 50
0
votes
0
replies
924
views
affyPLM interpretation
affyPLM DOSE affyPLM DOSE
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
921
views
Quantile Normalization on mice data
Normalization Clustering probe affyPLM Normalization Clustering probe affyPLM
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.1k
views
AffyPLM
affyPLM affyPLM
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.0k
views
Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
20.1 years ago Debjani Bhowmick ▴ 30
0
votes
0
replies
889
views
Interpretation of output of AffyRNAdeg and hist commands
Microarray Regression Cancer affyPLM Microarray Regression Cancer affyPLM
20.0 years ago James W. MacDonald 65k
0
votes
0
replies
638
views
using fitPLM weights in limma analysis
affy limma affyPLM affy limma affyPLM
20.0 years ago Tom Price ▴ 20
0
votes
1
reply
1.4k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 20.0 years ago by ★ 13k • written 20.0 years ago by ▴ 810
0
votes
0
replies
631
views
Chip art from affyPLM
affyPLM affyPLM
20.0 years ago Ben Bolstad ★ 1.1k
0
votes
0
replies
618
views
Platform independent compiler switches - affyPLM problem
affyPLM affyPLM
19.9 years ago Claudio Lottaz ▴ 110
0
votes
1
reply
1.1k
views
affy package in MacOSX
affy affydata matchprobes affyPLM affy affydata matchprobes affyPLM
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 60
0
votes
1
reply
712
views
reference on package affyPLM, fitPLM
affyPLM affyPLM
19.6 years ago Fangxin Hong ▴ 810
0
votes
2
replies
1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
votes
3
replies
1.2k
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ★ 1.7k
0
votes
1
reply
1.1k
views
Problems with packages: annaffy, GO, KEGG, golubEsets
GO edd annaffy affyPLM GO edd annaffy affyPLM
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 10
0
votes
0
replies
922
views
sanity check: recipe for p-value from RMA expression estimates
Normalization probe affy affyPLM Normalization probe affy affyPLM
19.2 years ago Reiner Schulz ▴ 20
0
votes
0
replies
897
views
sanity check: p-value from RMA expression estimates
Normalization probe affy affyPLM Normalization probe affy affyPLM
19.2 years ago Reiner Schulz ▴ 20
0
votes
0
replies
1.0k
views
remove probes - code
cdf probe affy gcrma affyPLM cdf probe affy gcrma affyPLM
19.0 years ago Ariel Chernomoretz ▴ 380
0
votes
2
replies
1.2k
views
Re: how to evaluate the arrays quality?
GO affy affyPLM GO affy affyPLM
updated 18.9 years ago by ▴ 110 • written 18.9 years ago by ▴ 350
0
votes
0
replies
545
views
Re: Use of RMA in increasingly-sized datasets
Microarray affyPLM Microarray affyPLM
18.9 years ago Swati Ranade ▴ 60
0
votes
0
replies
735
views
RMA for bad chips
Microarray Normalization affyPLM Microarray Normalization affyPLM
18.8 years ago James W. MacDonald 65k
0
votes
3
replies
1.1k
views
AffyPLM
affyPLM affyPLM
18.8 years ago lucia ¿? ▴ 50
0
votes
0
replies
791
views
Error messages in affylmGUI on PC with respect to plotting
Cancer limma affyPLM affylmGUI Cancer limma affyPLM affylmGUI
18.8 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
906
views
Error messages in affylmGUI on PC with respect to plotting
limma affyPLM affylmGUI limma affyPLM affylmGUI
18.8 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
1.3k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
749
views
Limma using all probes on Affy chip
Normalization probe affy limma affyPLM Normalization probe affy limma affyPLM
18.7 years ago Gordon Smyth 50k
0
votes
6
replies
1.1k
views
What wrong with my data using LIMMA
Microarray affy limma affyPLM Microarray affy limma affyPLM
updated 18.7 years ago by ★ 1.8k • written 18.7 years ago by 50k
0
votes
3
replies
1.2k
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 18.7 years ago by 50k • written 18.7 years ago by ▴ 270
0
votes
0
replies
557
views
MAplot in affyPLM library
affyPLM affyPLM
18.5 years ago Simon Lin ▴ 270
0
votes
0
replies
905
views
missing function in duplicateCorrelation?
Biobase affy affydata limma affyPLM Biobase affy affydata limma affyPLM
18.4 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
1.1k
views
RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 18.3 years ago by ▴ 810 • written 18.3 years ago by ▴ 940
0
votes
8
replies
1.9k
views
Biological replication (was RNA degradation problem)
Normalization probe affy affyPLM Normalization probe affy affyPLM
18.3 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
885
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.0 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
510
views
Sam always wants more observations
probe Biobase affy affyPLM probe Biobase affy affyPLM
18.0 years ago Charles Crane ▴ 30
0
votes
0
replies
789
views
affyPLM QC
affy affyPLM affy affyPLM
18.0 years ago Tan, Ruimin ▴ 50
0
votes
0
replies
732
views
affyPLM QC Assessment problem
affy affyPLM affy affyPLM
18.0 years ago Tan, Ruimin ▴ 50
0
votes
2
replies
1.3k
views
Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 17.9 years ago by ▴ 50 • written 17.9 years ago by ▴ 20
0
votes
2
replies
1.1k
views
median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 270
0
votes
1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
0
votes
1
reply
878
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 10
0
votes
2
replies
882
views
loading affyPLM with R 2.4.
affyPLM affyPLM
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 20
0
votes
0
replies
936
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.6 years ago k. brand ▴ 420
0
votes
0
replies
964
views
method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
17.6 years ago k. brand ▴ 420
0
votes
2
replies
956
views
normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 17.6 years ago by ★ 6.5k • written 17.6 years ago by ▴ 420
0
votes
2
replies
1.1k
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 420
0
votes
2
replies
2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 360
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards • All
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Popular Question to shepherl 3.9k
Popular Question to siajunren • 0
Scholar to Rory Stark ★ 5.2k
Locations • All
France, 4 minutes ago
St Louis, MO, 15 minutes ago
United States, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
Traffic: 626 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6