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align
•
reset
0
votes
0
replies
612
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom
Align
MicroarrayData
Alignment
Microarray
14 months ago
jsharif
• 0
0
votes
0
replies
718
views
SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
align
Alignment
subread
2.1 years ago
saira
• 0
2
votes
2
replies
1.3k
views
Rsubread doesn't output a .bai file
Rsubread
align
Alignment
updated 2.8 years ago by
Gordon Smyth
50k • written 2.8 years ago by
mike_flower
• 0
1
vote
5
replies
2.4k
views
Error: Input Files have different Amount of Reads
SubRead
Align
Subjunc
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
abano
• 0
0
votes
4
replies
1.3k
views
segfault "memory not mapped" using align from Rsubread
Rsubread
align
4.1 years ago
Joseph Fass
▴ 70
5
votes
6
replies
1.6k
views
Rsubread malloc(): memory corruption
Rsubread
malloc
align
updated 4.5 years ago by
Gordon Smyth
50k • written 4.7 years ago by
Konstantinos Yeles
▴ 80
5
votes
6
replies
1.4k
views
Improving the performance of the align function from Rsubread for old Roche454 reads
align
rsubread
roche454
rnaseq
updated 5.0 years ago by
Wei Shi
★ 3.6k • written 5.0 years ago by
Raito92
▴ 60
0
votes
9
replies
2.6k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread
alignment
align
5.4 years ago
A
▴ 40
1
vote
5
replies
1.8k
views
Error using Rsubread align: caugh segfault invalid permissions
rsubread
align
segfault
updated 7.9 years ago by
Wei Shi
★ 3.6k • written 7.9 years ago by
gerard_llimos
▴ 10
0
votes
1
reply
1.7k
views
RSubread 0% mapping
rsubread
mapping
featurecounts
align
8.4 years ago
Jo
▴ 30
10 results • Page
1 of 1
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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