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update all/some/none how to set default to "update all"
biocLite
update
all
default
ask
updated 5.2 years ago by
Fischer-philipp
▴ 30 • written 5.2 years ago by
rgiannico
▴ 10
0
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1
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1.4k
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"ALL" package under biocLite
R
ALL
updated 7.5 years ago by
Marcel Ramos
690 • written 7.5 years ago by
mdfislam89
• 0
4
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8
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2.3k
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ALL dataset, correct syntax using the exprs call?
ALL
bioconductor
biobase
exprs
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
detroit.drive
• 0
0
votes
3
replies
1.4k
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Job:
Tutor Wanted: help with R statistical analysis (must be familiar with Bioconductor)
bioconductor
ALL
R
Job
5.7 years ago
detroit.drive
• 0
2
votes
2
replies
1.4k
views
Building linear model (age effect on gene expression)
bioconductor
ALL
linear model
updated 5.7 years ago by
Gordon Smyth
50k • written 5.7 years ago by
detroit.drive
• 0
2
votes
1
reply
2.7k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
av
• 0
0
votes
1
reply
1.7k
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Bioconductor will not install on Rstudio
ALL
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
xxxsarahkimxxx
• 0
0
votes
6
replies
833
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
11 months ago • updated 10 months ago
simone.tiberi
• 0
0
votes
1
reply
491
views
Categorical or continuous covariates
ALL
The
DifferentialRegulation
PathNet
updated 14 months ago by
heritageericsson
• 0 • written 15 months ago by
Mine
• 0
9 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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