Showing : annotationTools • reset
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 2.2 years ago by ★ 5.0k • written 2.2 years ago by • 0
0
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1
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900
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Which species does GO.db use
GO.db annotationTools
updated 2.5 years ago by ▴ 760 • written 2.5 years ago by • 0
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3
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1.2k
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
4.2 years ago Shane • 0
2
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10
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3.7k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 4.2 years ago by ★ 4.1k • written 4.2 years ago by • 0
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2
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1.6k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 5.0 years ago by ★ 6.6k • written 5.0 years ago by • 0
1
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3
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 8.0 years ago by 68k • written 8.0 years ago by ▴ 70
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4
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2.1k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 16.4 years ago by ▴ 20 • written 16.5 years ago by ▴ 20
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1
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1.6k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 16.6 years ago by ▴ 20 • written 16.6 years ago by ▴ 50
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1.4k
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annotationTools incorrect use of ortholog
annotationTools annotationTools
17.5 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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