Showing : annotationTools • reset
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 11 months ago by ★ 4.5k • written 11 months ago by • 0
0
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1
reply
599
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Which species does GO.db use
GO.db annotationTools
updated 15 months ago by ▴ 760 • written 15 months ago by • 0
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3
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957
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 2.1 years ago by 67k • written 2.1 years ago by • 0
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.0 years ago Shane • 0
2
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10
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2.8k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 3.0 years ago by ★ 4.1k • written 3.1 years ago by • 0
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2
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1.3k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 3.8 years ago by ★ 6.6k • written 3.8 years ago by • 0
1
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3
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1.4k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 6.8 years ago by 67k • written 6.8 years ago by ▴ 70
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4
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1.7k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 15.3 years ago by ▴ 20 • written 15.3 years ago by ▴ 20
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1
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1.4k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 15.4 years ago by ▴ 20 • written 15.4 years ago by ▴ 50
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1.1k
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annotationTools incorrect use of ortholog
annotationTools annotationTools
16.3 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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