Showing : annotationTools • reset
0
votes
2
replies
992
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 2.0 years ago by ★ 5.0k • written 2.1 years ago by • 0
0
votes
1
reply
875
views
Which species does GO.db use
GO.db annotationTools
updated 2.4 years ago by ▴ 760 • written 2.4 years ago by • 0
0
votes
3
replies
1.2k
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
votes
0
replies
1.4k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
4.1 years ago Shane • 0
2
votes
10
replies
3.6k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 4.1 years ago by ★ 4.1k • written 4.1 years ago by • 0
0
votes
2
replies
1.6k
views
Error log when I use biomaRt getBM
biomaRt annotationTools
updated 4.8 years ago by ★ 6.6k • written 4.9 years ago by • 0
1
vote
3
replies
1.7k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 7.9 years ago by 68k • written 7.9 years ago by ▴ 70
0
votes
4
replies
2.0k
views
Annotation Tools package
probe annotationTools probe annotationTools
updated 16.3 years ago by ▴ 20 • written 16.3 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 16.5 years ago by ▴ 20 • written 16.5 years ago by ▴ 50
0
votes
0
replies
1.3k
views
annotationTools incorrect use of ortholog
annotationTools annotationTools
17.4 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
Popular Question to shepherl 4.2k
Locations • All
The city by the bay, 21 minutes ago
United States, 40 minutes ago
United States, 1 hour ago
United States, 1 hour ago
United States, 2 hours ago
Traffic: 1030 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6