Showing : annotationTools • reset
0
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 22 months ago by ★ 5.0k • written 23 months ago by • 0
0
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1
reply
836
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Which species does GO.db use
GO.db annotationTools
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by • 0
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3
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1.2k
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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1.3k
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.9 years ago Shane • 0
2
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10
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3.5k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 4.0 years ago by ★ 4.1k • written 4.0 years ago by • 0
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2
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1.6k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 4.7 years ago by ★ 6.6k • written 4.7 years ago by • 0
1
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3
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1.7k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 70
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4
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2.0k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 16.2 years ago by ▴ 20 • written 16.2 years ago by ▴ 20
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1
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1.5k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 16.3 years ago by ▴ 20 • written 16.3 years ago by ▴ 50
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1.3k
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annotationTools incorrect use of ortholog
annotationTools annotationTools
17.2 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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