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annotationTools
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0
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2
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692
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 14 months ago by
ATpoint
★ 4.6k • written 14 months ago by
yw24418
• 0
0
votes
1
reply
676
views
Which species does GO.db use
GO.db
annotationTools
updated 18 months ago by
Lluís Revilla Sancho
▴ 760 • written 18 months ago by
youngleel
• 0
0
votes
3
replies
1.0k
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 2.3 years ago by
James W. MacDonald
67k • written 2.3 years ago by
jt.cathey
• 0
0
votes
0
replies
1.1k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
3.2 years ago
Shane
• 0
2
votes
10
replies
3.0k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 3.3 years ago by
Guido Hooiveld
★ 4.1k • written 3.3 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.4k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 4.0 years ago by
Mike Smith
★ 6.6k • written 4.0 years ago by
niyamurry
• 0
1
vote
3
replies
1.5k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 7.1 years ago by
James W. MacDonald
67k • written 7.1 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.8k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 15.5 years ago by
Brad Ander
▴ 20 • written 15.5 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.4k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 15.6 years ago by
Alexandre Kuhn
▴ 20 • written 15.6 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
1.2k
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
16.6 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
10 results • Page
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Comment: displaying the differential expression with deseq2 over 4X2 samples with the in
by
Martijn
• 0
thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…
Comment: plyranges: find exact GRanges match keeping metadata columns
by
alexis.weinreb
• 0
Thank you, this does clarify the available options.
Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
by
James W. MacDonald
67k
If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…
Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq?
by
jodan
• 0
Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…
Answer: Unused arguments error without used arguments in GSVA?
by
jodan
• 0
It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…
Votes
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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