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2
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1.1k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 3.2 years ago by ★ 6.5k • written 3.2 years ago by • 0
0
votes
4
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1.5k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 14.7 years ago by ▴ 20 • written 14.7 years ago by ▴ 20
1
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3
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1.2k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 6.3 years ago by 65k • written 6.3 years ago by ▴ 70
2
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10
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2.3k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 2.5 years ago by ★ 3.9k • written 2.5 years ago by • 0
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3
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738
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 18 months ago by 65k • written 18 months ago by • 0
0
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1
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1.2k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 14.9 years ago by ▴ 20 • written 14.9 years ago by ▴ 50
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2
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343
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 5 months ago by ★ 4.0k • written 5 months ago by • 0
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1
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374
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Which species does GO.db use
GO.db annotationTools
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
2.4 years ago Shane • 0
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0
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980
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annotationTools incorrect use of ortholog
annotationTools annotationTools
15.8 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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