Bioconductor Annotationtools

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1.1k

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AnnotationHubSoftware SingleCellData annotationTools

updated 2.2 years ago by ATpoint ★ 5.0k • written 2.2 years ago by yw24418 • 0

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920

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GO.db annotationTools

updated 2.6 years ago by Lluís Revilla Sancho ▴ 760 • written 2.6 years ago by youngleel • 0

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1.2k

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annotationTools

updated 3.3 years ago by James W. MacDonald 68k • written 3.3 years ago by jt.cathey • 0

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1.4k

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process annotationTools AnnotationFilter Annotation biomaRt

4.2 years ago Shane • 0

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3.8k

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AnnotationFilter annotationTools AnnotationHub AnnotationData

updated 4.3 years ago by Guido Hooiveld ★ 4.1k • written 4.3 years ago by Javan Okendo • 0

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1.7k

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biomaRt annotationTools

updated 5.0 years ago by Mike Smith ★ 6.6k • written 5.0 years ago by niyamurry • 0

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1.8k

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microarray annotation annotationdbi affycoretools annotationtools

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by eleonoregravier ▴ 70

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2.1k

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probe annotationTools probe annotationTools

updated 16.5 years ago by Brad Ander ▴ 20 • written 16.5 years ago by Yingfang Tian ▴ 20

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1.6k

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GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools

updated 16.7 years ago by Alexandre Kuhn ▴ 20 • written 16.7 years ago by Giusy Della Gatta ▴ 50

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1.4k

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annotationTools annotationTools

17.6 years ago Nathan.Watson-Haigh@csiro.au ▴ 210

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760