Showing : annotationtools • reset
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922
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware SingleCellData annotationTools
updated 23 months ago by ★ 5.0k • written 23 months ago by • 0
0
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1
reply
847
views
Which species does GO.db use
GO.db annotationTools
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by • 0
0
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3
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1.2k
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Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
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1.3k
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Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.9 years ago Shane • 0
2
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10
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3.5k
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Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter annotationTools AnnotationHub AnnotationData
updated 4.0 years ago by ★ 4.1k • written 4.0 years ago by • 0
0
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2
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1.6k
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Error log when I use biomaRt getBM
biomaRt annotationTools
updated 4.7 years ago by ★ 6.6k • written 4.7 years ago by • 0
1
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3
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1.7k
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Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 70
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4
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2.0k
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Annotation Tools package
probe annotationTools probe annotationTools
updated 16.2 years ago by ▴ 20 • written 16.2 years ago by ▴ 20
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1
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1.6k
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Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 16.3 years ago by ▴ 20 • written 16.4 years ago by ▴ 50
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0
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1.3k
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annotationTools incorrect use of ortholog
annotationTools annotationTools
17.3 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
10 results • Page 1 of 1
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Answer: Issue with Soft-Thresholding in WGCNA by misty.chickadee.vckc • 0
Hi Maria, your detailed explanation is super helpful! The NA power estimate in WGCNA can be tricky. I've sometimes seen that when the data …
Comment: Interpretation of output of AffyRNAdeg and hist commands by debasainalsa • 0
When working with AffyRNAdeg output it helps to think of the table like browsing a HEYTEA Menu each row shows a feature of your slides and …
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
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A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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