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bam file
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reset
1
vote
24
replies
5.6k
views
GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
7.2 years ago
achaillon
• 0
1
vote
19
replies
27k
views
Import bamfiles for RNAsequencing analysis
R
rnaseq
bam file
updated 6.6 years ago by
Gordon Smyth
52k • written 6.6 years ago by
Merlin
▴ 10
4
votes
5
replies
2.0k
views
No BAM option in readAligned from the ShortRead package
bioconductor
shortread
bam file
nucler
updated 6.8 years ago by
Dario Strbenac
★ 1.5k • written 6.8 years ago by
jfgout
▴ 10
2
votes
2
replies
1.5k
views
CSAW : at which bam files are corresponding “up” regions
csaw
up regions
bam file
gain and loss of enrichment
updated 8.7 years ago by
Aaron Lun
★ 28k • written 8.7 years ago by
JoannaF
▴ 10
1
vote
5
replies
4.2k
views
Rsamtools: system.file no file found
rsamtools
bam file
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
seungjoon.kim
• 0
0
votes
2
replies
1.3k
views
BAM file into R from Illumina
bam file
STAR
Illumina
updated 6.6 years ago by
ta_awwad
▴ 10 • written 6.6 years ago by
soheilazareie
• 0
0
votes
1
reply
1.4k
views
Questions for MEDIPS getPairedGRange function in MEDIPS.readRegionsFile.R
medips
bam file
8.5 years ago
fkuo
▴ 10
0
votes
0
replies
1.7k
views
Merge two BAM files into one paired-end file
paired-end reads
bam file
7.0 years ago
ioannis.vardaxis
▴ 30
8 results • Page
1 of 1
Recent ...
Replies
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…
Comment: Differential Expression Genes as Independent Variables
by
Dario Strbenac
★ 1.5k
Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …
Comment: rrvgo::calculateSimMatrix() error
by
Phila
• 0
Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/
Comment: Merge Replicates vs Mixed Model
by
gabriel.hoffman
▴ 170
For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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