Showing : batchelor • reset
0
votes
2
replies
1.2k
views
Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN SingleCellData BatchEffect batchelor
14 months ago José • 0
2
votes
2
replies
890
views
Should tSNE from biol. replicates look alike?
scRNAseq SingleCellExperiment batchelor
written 16 months ago by ▴ 10
0
votes
6
replies
1.5k
views
fastMNN reproducibility across machines when using Docker
batchelor
2.5 years ago nils.eling ▴ 10
4
votes
2
replies
1.9k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor fastMNN scRNAseq
3.4 years ago Guandong Shang ▴ 40
0
votes
4
replies
3.1k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater batchelor scRNAseq fastMNN
updated 3.4 years ago by ★ 29k • written 3.4 years ago by ▴ 40
1
vote
5
replies
2.0k
views
batch effect
TargetScoreData batchelor
written 3.4 years ago by ▴ 10
2
votes
7
replies
2.3k
views
batchelor correctExperiments() returns Error in eval(subscript, envir = eframe, enclos = eframe) : '...' used in an incorrect context
batchelor
3.6 years ago • updated 3.5 years ago pcantalupo ▴ 10
2
votes
2
replies
1.7k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn batchelor BatchEffect
4.3 years ago p.joshi ▴ 40
0
votes
2
replies
2.4k
views
Error coercing LowRankMatrix to dgCMatrix
BiocSingular zellkonverter batchelor
updated 5.0 years ago by ▴ 50 • written 5.0 years ago by ▴ 70
0
votes
2
replies
2.1k
views
Removal of cell cycle effect using batchelor::regressBatches() and proper usage of corrected UMI matrix
scRNAseq batchelor SingleCell SingleCellExperiment scran
5.1 years ago jirkanov • 0
1
vote
1
reply
1.6k
views
Combining treatment and control batches for analysis
scRNAseq scRNA batchelor BatchEffect
updated 5.2 years ago by ★ 29k • written 5.2 years ago by • 0
2
votes
3
replies
2.8k
views
multiBatchNorm vs. calculateSumFactors on concatenated dataset
batchelor scran
updated 5.4 years ago by ★ 29k • written 5.4 years ago by • 0
3
votes
3
replies
3.8k
views
Cell cycle regression for scRNA-seq data
OSCA batchelor cell cycle regression
updated 5.4 years ago by ★ 29k • written 5.4 years ago by ★ 5.0k
2
votes
6
replies
2.0k
views
Why is an averaged reference used in DESeq2 normalisation?
deseq2 scran batchelor
updated 5.5 years ago by ★ 29k • written 5.5 years ago by • 0
3
votes
1
reply
1.9k
views
Scaling option in fastMNN
fastmnn scater batchelor
updated 5.6 years ago by ★ 29k • written 5.6 years ago by ★ 5.0k
3
votes
6
replies
4.4k
views
Carry over variable features when converting FastMNN SCE object to Seurat object
mnn batchelor scrna-seq seurat
updated 5.6 years ago by ★ 29k • written 5.6 years ago by • 0
2
votes
1
reply
1.6k
views
batchelor batch correction correction runs into errors
batchelor batch-correction mnncorrect fastmnn rna-seq
updated 5.7 years ago by ★ 29k • written 6.4 years ago by ▴ 20
3
votes
3
replies
2.1k
views
MNN batch correction of pre-computed PCA
single cell batchelor
updated 5.7 years ago by ★ 29k • written 5.7 years ago by ▴ 10
1
vote
2
replies
2.2k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN CITE-seq ADT-seq batchelor REAP-seq
updated 5.8 years ago by ★ 29k • written 5.8 years ago by • 0
0
votes
5
replies
3.1k
views
How to perform batch correction on scRNA-seq with confounding plate effects?
batchelor
updated 8 months ago by • 0 • written 5.8 years ago by • 0
2
votes
2
replies
2.7k
views
Subclustering after MNN batch-correction
batchelor mnn scrna-seq
updated 3.4 years ago by ▴ 40 • written 6.0 years ago by • 0
21 results • Page 1 of 1
Recent ...
Replies
Answer: ChAMP pipeline error (champ.import) by surferssubway743 • 0
[Geometry Dash Subzero][1] has a harder difficulty level with more enemies and more involved gameplay that needs lightning-fast reflexes an…
Comment: DECIPHER DesignProbes unable to design FISH-probes by waveappeal • 0
@[Geometry][1] Snapchat truly remains a popular app that fosters connection among people. Follow and stay updated to build and develop a su…
Comment: Guitar R package requires update due to dependency GenomicFeatures by crystalswing • 0
@[Slope Free][1] I'm impressed with your referrals for effectively fixing these issues. I'll be following up and potentially gathering more…
Comment: Problem with the TMB plot by 928380504 • 0
Itcapybara clicker is Slice Masternot o1v1 lolnlplanet clicker y level-devileasy to read bu Build Now GG|||| also make the conten more rich…
Comment: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by 928380504 • 0
[https://play-slice-master.com/][1][https://1v1-lol.cc/][2][https://planet-clicker.co/][3][https://play-level-devil.com/][4][https://buildn…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Popular Question to lianov • 0
Locations • All
Vietnam, 1 minute ago
United States, 18 minutes ago
Paraguay, 34 minutes ago
Paraguay, 38 minutes ago
WEHI, Melbourne, Australia, 42 minutes ago
Traffic: 1535 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6