Showing : batchelor • reset
0
votes
2
replies
1.2k
views
Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN SingleCellData BatchEffect batchelor
14 months ago José • 0
2
votes
2
replies
881
views
Should tSNE from biol. replicates look alike?
scRNAseq SingleCellExperiment batchelor
written 16 months ago by ▴ 10
0
votes
6
replies
1.5k
views
fastMNN reproducibility across machines when using Docker
batchelor
2.5 years ago nils.eling ▴ 10
4
votes
2
replies
1.9k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor fastMNN scRNAseq
3.4 years ago Guandong Shang ▴ 40
0
votes
4
replies
3.1k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater batchelor scRNAseq fastMNN
updated 3.4 years ago by ★ 29k • written 3.4 years ago by ▴ 40
1
vote
5
replies
1.9k
views
batch effect
TargetScoreData batchelor
written 3.4 years ago by ▴ 10
2
votes
7
replies
2.3k
views
batchelor correctExperiments() returns Error in eval(subscript, envir = eframe, enclos = eframe) : '...' used in an incorrect context
batchelor
3.5 years ago pcantalupo ▴ 10
2
votes
2
replies
1.7k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn batchelor BatchEffect
4.3 years ago p.joshi ▴ 40
0
votes
2
replies
2.3k
views
Error coercing LowRankMatrix to dgCMatrix
BiocSingular zellkonverter batchelor
updated 4.9 years ago by ▴ 50 • written 4.9 years ago by ▴ 70
0
votes
2
replies
2.1k
views
Removal of cell cycle effect using batchelor::regressBatches() and proper usage of corrected UMI matrix
scRNAseq batchelor SingleCell SingleCellExperiment scran
5.1 years ago • updated 5.0 years ago jirkanov • 0
1
vote
1
reply
1.6k
views
Combining treatment and control batches for analysis
scRNAseq scRNA batchelor BatchEffect
updated 5.1 years ago by ★ 29k • written 5.1 years ago by • 0
2
votes
3
replies
2.8k
views
multiBatchNorm vs. calculateSumFactors on concatenated dataset
batchelor scran
updated 5.4 years ago by ★ 29k • written 5.4 years ago by • 0
3
votes
3
replies
3.7k
views
Cell cycle regression for scRNA-seq data
OSCA batchelor cell cycle regression
updated 5.4 years ago by ★ 29k • written 5.4 years ago by ★ 5.0k
2
votes
6
replies
2.0k
views
Why is an averaged reference used in DESeq2 normalisation?
deseq2 scran batchelor
updated 5.5 years ago by ★ 29k • written 5.5 years ago by • 0
3
votes
1
reply
1.8k
views
Scaling option in fastMNN
fastmnn scater batchelor
updated 5.5 years ago by ★ 29k • written 5.5 years ago by ★ 5.0k
3
votes
6
replies
4.3k
views
Carry over variable features when converting FastMNN SCE object to Seurat object
mnn batchelor scrna-seq seurat
updated 5.6 years ago by ★ 29k • written 5.6 years ago by • 0
2
votes
1
reply
1.6k
views
batchelor batch correction correction runs into errors
batchelor batch-correction mnncorrect fastmnn rna-seq
updated 5.7 years ago by ★ 29k • written 6.4 years ago by ▴ 20
3
votes
3
replies
2.1k
views
MNN batch correction of pre-computed PCA
single cell batchelor
updated 5.7 years ago by ★ 29k • written 5.7 years ago by ▴ 10
1
vote
2
replies
2.1k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN CITE-seq ADT-seq batchelor REAP-seq
updated 5.8 years ago by ★ 29k • written 5.8 years ago by • 0
0
votes
5
replies
3.0k
views
How to perform batch correction on scRNA-seq with confounding plate effects?
batchelor
updated 8 months ago by • 0 • written 5.8 years ago by • 0
2
votes
2
replies
2.7k
views
Subclustering after MNN batch-correction
batchelor mnn scrna-seq
updated 3.4 years ago by ▴ 40 • written 6.0 years ago by • 0
21 results • Page 1 of 1
Recent ...
Replies
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Locations • All
The city by the bay, 42 minutes ago
The Netherlands, 1 hour ago
California, USA, 1 hour ago
United Kingdom, 2 hours ago
Germany, 2 hours ago
Traffic: 1152 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6