Showing : big data • reset
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
3
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1
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1.2k
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AnnotationHub: confusing pValue/qValue for (some) Roadmap records
roadmap project annotationhub epigenomics big data
updated 7.6 years ago by ★ 6.8k • written 7.6 years ago by ▴ 320
1
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1
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957
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Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle Big data coverageByTranscript
5.6 years ago hauken_heyken ▴ 80
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0
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1.2k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
4.8 years ago • updated 4.0 years ago Luo Weijun ★ 1.6k
0
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0
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Job: Postdoctoral positions in drug discovery and genome data science
computational biology biostatistics big data data science drug discovery Job
4.8 years ago Thomas Girke ★ 1.7k
0
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740
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Job: Data Manager - BC Cancer Research Center, Vancouver BC
computational genomic big data bioinformatics Job
4.5 years ago jmaanaki • 0
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Job: Postdoctoral Research Associate Position- Harvard Medical School (Probabilistic Algorithms and Software for Biomedical Big Data)
Probabilistic Algorithms Big Data Job
8.6 years ago Doe, Aimee ▴ 40
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1.1k
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What is the recommended method for running WGCNA on large metatranscriptomic dataset?
wgcna transcriptome big data metagenomics gene expression
5.8 years ago jol.espinoz ▴ 40
8 results • Page 1 of 1
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Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE) by James W. MacDonald 64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B by Mike Smith ★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Votes
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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