Showing : biobase • reset
0
votes
0
replies
298
views
Affy autodownload cdf problem
Biobase affy Biobase affy
19.9 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.9k
views
Biobase/affy installation problem in linux
Biobase affy limma Biobase affy limma
updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 100
0
votes
2
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1.4k
views
problem with annaffy aafFunction function
GO hgu95av2 rat2302 Biobase annotate reposTools affy annaffy GO hgu95av2 rat2302 affy
updated 19.9 years ago by 68k • written 19.9 years ago by ▴ 890
0
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2
replies
1.1k
views
AnnBuilder problem?
Organism Biobase annotate AnnBuilder Organism Biobase annotate AnnBuilder
updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 50
0
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0
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641
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Redirected to BioC Re: [Bioc-devel] aafTableAnn() in annaffy_1.0.18 ?
Microarray Cancer Biobase Microarray Cancer Biobase
20.0 years ago James W. MacDonald 68k
0
votes
5
replies
1.8k
views
PLIER affinities redux
cdf probe Biobase affy plier cdf probe Biobase affy plier
updated 20.0 years ago by ★ 1.1k • written 20.0 years ago by ▴ 60
0
votes
0
replies
1.1k
views
PLIER affinities redux
ath1121501 cdf probe Biobase affy plier ath1121501 cdf probe Biobase affy plier
20.0 years ago Matthew Hannah ▴ 940
0
votes
1
reply
946
views
error in getMonograph() - many packages not available
Biobase reposTools affy Biobase reposTools affy
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ★ 2.2k
0
votes
0
replies
1.2k
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
20.0 years ago Kimpel, Mark W ▴ 890
0
votes
3
replies
1.2k
views
problem with package version of rat2302 1.8.5
Annotation rat2302 Biobase reposTools affy Annotation rat2302 Biobase reposTools affy
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 890
0
votes
0
replies
1.0k
views
ABPkgBuilder Error; Again
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
20.1 years ago Barry Henderson ▴ 250
0
votes
4
replies
1.4k
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 20.1 years ago by ★ 7.4k • written 20.1 years ago by ▴ 250
0
votes
1
reply
806
views
Biobase 1.6.3
Microarray Cancer Biobase Microarray Cancer Biobase
updated 20.2 years ago by ★ 7.4k • written 20.2 years ago by 68k
0
votes
1
reply
1.3k
views
simpleAffy, custom chip error
Microarray Cancer cdf probe Biobase affy gcrma matchprobes simpleaffy Microarray Cancer
updated 20.3 years ago by ★ 1.1k • written 20.3 years ago by ▴ 10
0
votes
2
replies
1.3k
views
metadata zzz.R files use delay - breaks r-devel,
Biobase Biobase
updated 20.4 years ago by ★ 5.5k • written 20.4 years ago by ▴ 140
0
votes
1
reply
1.1k
views
exprSet
Biobase Biobase
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 100
0
votes
0
replies
775
views
rma on new samples
Classification probe Biobase affy PROcess Classification probe Biobase affy PROcess
20.5 years ago Kuhn, Max ▴ 70
0
votes
2
replies
1.1k
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 20.6 years ago by ★ 7.4k • written 20.6 years ago by ▴ 10
0
votes
0
replies
1.0k
views
exprSet object help
Biobase affy Biobase affy
20.7 years ago Marcelo Luiz de Laia ▴ 770
0
votes
2
replies
1.1k
views
yeastCC installs ok, but won't load; R2.0.1
Biobase annotate Biobase annotate
20.7 years ago JDCGo@aol.com ▴ 30
0
votes
0
replies
1.2k
views
batch vs interactive behavior of reposTools()
Biobase DynDoc tkWidgets widgetTools Biobase DynDoc tkWidgets widgetTools
20.8 years ago Marion Hakanson ▴ 50
0
votes
0
replies
1.0k
views
subsetting exprsSet
Biobase Biobase
20.8 years ago Beth Wilmot ▴ 120
0
votes
2
replies
1.6k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 20.9 years ago by ★ 7.4k • written 20.9 years ago by ▴ 130
0
votes
1
reply
2.0k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by ▴ 100
0
votes
0
replies
1.3k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.0 years ago rgentleman ★ 5.5k
0
votes
0
replies
1.4k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.0 years ago Goeman, J.J. MSTAT ▴ 150
0
votes
2
replies
748
views
More environments facilities ?
Biobase Biobase
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ▴ 400
0
votes
1
reply
664
views
How do I make exprSet?
Biobase Biobase
updated 21.0 years ago by ★ 1.1k • written 21.1 years ago by ★ 5.5k
0
votes
1
reply
1.3k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago Matthew Hannah ▴ 940
0
votes
3
replies
1.9k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 21.1 years ago by ★ 2.9k • written 21.1 years ago by ▴ 90
0
votes
0
replies
1.3k
views
Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
21.1 years ago Matthew Hannah ▴ 940
0
votes
2
replies
1.3k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 21.2 years ago by ★ 5.5k • written 21.2 years ago by ▴ 320
0
votes
0
replies
1.3k
views
How to download package bundles?
Biobase edd AnnBuilder Biostrings Biobase edd AnnBuilder Biostrings
21.2 years ago Peter Baker CMIS, Indooroopilly ▴ 80
0
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2
replies
1.1k
views
homoPkgBuilder (AnnBuilder 1.4.2/1.4.6) exits with errors
Biobase AnnBuilder Biobase AnnBuilder
21.3 years ago Gunnar Wrobel ▴ 60
0
votes
4
replies
1.3k
views
Which package "Multiget" belongs
Biobase reposTools affy Biobase reposTools affy
21.3 years ago nbing ▴ 30
0
votes
2
replies
1.0k
views
Re: matchprobes vignette?
probe Biobase matchprobes probe Biobase matchprobes
updated 21.3 years ago by ▴ 130 • written 21.3 years ago by ★ 5.5k
0
votes
7
replies
1.7k
views
matchprobes vignette?
probe Biobase matchprobes probe Biobase matchprobes
updated 21.3 years ago by ★ 3.9k • written 21.3 years ago by ▴ 130
0
votes
0
replies
574
views
Installing Bioconductor 1.4 Help Files
Biobase Biobase
21.4 years ago White, Charles E WRAIR-Wash DC ▴ 30
0
votes
1
reply
884
views
iffail argument in mget of mas5, rma
Biobase affy Biobase affy
updated 21.4 years ago by 68k • written 21.4 years ago by ★ 1.8k
0
votes
1
reply
867
views
ReadAffy problem sampleNames + hgu95av2
hgu95av2 Biobase affy hgu95av2 Biobase affy
21.4 years ago Adaikalavan Ramasamy ★ 1.8k
0
votes
0
replies
1.2k
views
Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
21.5 years ago Debjani Bhowmick ▴ 30
0
votes
2
replies
934
views
Problem with latest win32 package installs
GO probe Biobase affy GO probe Biobase affy
21.5 years ago Matthew Hannah ▴ 940
0
votes
0
replies
1.1k
views
Re: trouble installing "affy" package
Cancer Biobase tkWidgets affy Cancer Biobase tkWidgets affy
21.7 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
2.8k
views
trouble installing "affy" package
Biobase tkWidgets affy Biobase tkWidgets affy
21.7 years ago Jeffrey Chang ▴ 40
0
votes
1
reply
1.0k
views
gcrma on small computers
Biobase reposTools affy gcrma Biobase reposTools affy gcrma
updated 21.7 years ago by ▴ 410 • written 21.7 years ago by ▴ 720
0
votes
0
replies
1.2k
views
Affy Install
Biobase affy Biobase affy
21.8 years ago Jason Skelton ▴ 510
0
votes
4
replies
1.6k
views
Recent changes to Bioconductor packages
Annotation GO Biobase Annotation GO Biobase
21.9 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
1
reply
1.1k
views
BioC release 1.3
Biobase reposTools Biobase reposTools
21.9 years ago Josephine.Liang@uchsc.edu ▴ 60
0
votes
1
reply
686
views
Trouble getting started with Bioconductor
GO Biobase AnnBuilder GO Biobase AnnBuilder
updated 21.9 years ago by ★ 13k • written 21.9 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Error in validityMethod(object): No slot of name"phenoLabels" for this object o
Microarray Cancer Biobase affy Microarray Cancer Biobase affy
updated 22.0 years ago by ★ 5.5k • written 22.0 years ago by 68k
288 results • Page 5 of 6
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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