Showing : biocViews • reset
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3
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qvalues installation
biocViews
3.2 years ago jdorgan • 0
0
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1
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1.2k
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Question about sumbition process and biocviews
biocviews biocparallel github package submission
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 30
1
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1
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1.1k
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How to suggest BiocViews tags for an existing package?
biocviews champ
8.6 years ago Peter Hickey ▴ 740
1
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3
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2.4k
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Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 40
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2.1k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
10.0 years ago Elena Serrano ▴ 30
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0
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4.1k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.1 years ago Dan Tenenbaum ★ 8.2k
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0
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3.4k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
10.3 years ago Elena Serrano ▴ 30
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2
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1.8k
views
pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.0 years ago by ▴ 20 • written 10.3 years ago by ▴ 40
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5
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1.8k
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Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews
10.4 years ago Thomas Girke ★ 1.7k
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1
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2.0k
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Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 10.5 years ago by ★ 4.3k • written 10.5 years ago by ▴ 290
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0
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4.0k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
10.6 years ago Dan Tenenbaum ★ 8.2k
2
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4
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2.7k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 10.9 years ago by ★ 3.9k • written 10.9 years ago by ▴ 140
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2
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3.8k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
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4
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1.5k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 11.5 years ago by ▴ 50 • written 11.5 years ago by ★ 13k
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0
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3.1k
views
Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
11.6 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.3k
views
AnnotationDbi: NewSchema vignette error
BiocViews miRNA Annotation Cancer Organism biocViews AnnotationDbi BiocViews BiocViews
updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ▴ 910
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0
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1.3k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.0 years ago zeynep özkeserli ▴ 160
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1.3k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.0 years ago zeynep özkeserli ▴ 160
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2
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1.3k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ★ 13k
0
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0
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995
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makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
12.2 years ago Guest User ★ 13k
0
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1
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1.4k
views
makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : , bind.data must have non-zero dimensions
BiocViews Annotation Organism biocViews BiocViews BiocViews Annotation Organism biocViews
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 20
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0
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1.4k
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Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
12.9 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
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4
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4.3k
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An error in oligo: All the CEL files must be of the same type??
BiocViews Annotation Organism biocViews oligo BiocViews BiocViews Annotation Organism
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 20
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0
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1.4k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
13.5 years ago Martin Morgan 25k
0
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1
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1.5k
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error fix.by(by.x, x) in Pdinfobuilder package
BiocViews Microarray Annotation Organism biocViews BiocViews BiocViews Microarray Organism
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 60
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0
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1.2k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
13.9 years ago Marc Carlson ★ 7.2k
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0
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960
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
13.9 years ago Julian Lee ▴ 10
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1
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1.6k
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Affy Gene ST arrays with "oligo"
BiocViews Annotation Organism affy PROcess biocViews BiocViews BiocViews Annotation affy
updated 14.9 years ago by ★ 3.9k • written 14.9 years ago by ▴ 830
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1
reply
986
views
error while using oligo to build a custom affy cdf
BiocViews cdf affy biocViews BiocViews BiocViews cdf affy biocViews
updated 15.6 years ago by 65k • written 15.6 years ago by ▴ 830
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3
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1.3k
views
inquiry for CDF file
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
15.6 years ago Rob Dunne ▴ 230
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1.3k
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Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
15.7 years ago Ludo Muller ▴ 50
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0
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1.2k
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confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
15.8 years ago Lynn Amon ▴ 280
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1
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1.7k
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confusion about nomenclature of illumina annotation packages
BiocViews annotate biocViews BiocViews BiocViews annotate biocViews
updated 15.8 years ago by ▴ 280 • written 15.8 years ago by ▴ 130
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3
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1.4k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 10
0
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0
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1.3k
views
BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
17.6 years ago Seth Falcon ★ 7.4k
0
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1
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926
views
getting a list of packages by biocView tags
BiocViews biocViews BiocViews BiocViews biocViews
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 50
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0
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1.3k
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Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.0 years ago Seth Falcon ★ 7.4k
37 results • Page 1 of 1
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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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