Bioconductor Block

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1.8k

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limma microarray block

updated 7 months ago by Gordon Smyth 50k • written 5.2 years ago by tleona3 • 0

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2.0k

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limma sva block

updated 2.2 years ago by stuartthafass • 0 • written 9.5 years ago by kodream ▴ 20

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946

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limma BatchEffect duplicatecorrelation block batch

updated 3.5 years ago by Kevin Blighe ★ 3.9k • written 3.5 years ago by Katherine • 0

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999

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diffbind block regression deseq2 chipseq

updated 3.5 years ago by Rory Stark ★ 5.2k • written 4.5 years ago by melnuesch ▴ 10

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1.3k

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missmethyl diffvar design matrix limma block

updated 6.0 years ago by lhuang7 ▴ 50 • written 6.9 years ago by Simone ▴ 190

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2.8k

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batch effect Coeficents non estimable block random effects limma design matrix

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by mheydarpour ▴ 10

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1.3k

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time course block batch effect WGCNA

updated 7.1 years ago by Michael Love 42k • written 7.1 years ago by xie186 • 0

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1.3k

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limma roast mroast block

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by barbara.shih • 0

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1.5k

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deseq2 block pca

7.9 years ago • updated 7.8 years ago akp • 0

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3.1k

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limma covariate block paired samples technical replicates

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by eleonoregravier ▴ 70

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8.4k

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batch effect combat limma block

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by eleonoregravier ▴ 70

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1.8k

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limma block design and contrast matrix

8.9 years ago choofd • 0

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5.5k

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limma microarray block paired linear model

9.4 years ago vas ▴ 40

13 results • Page 1 of 1

Recent ...

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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k

Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …

Comment: Help with running egsea() by James W. MacDonald 65k

Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…

Comment: Help with running egsea() by Chris • 0

Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

Awards • All

Popular Question to WouterDeCoster ▴ 130

Scholar to Michael Love 42k

Popular Question to Malcolm Cook ★ 1.6k

Teacher to Gordon Smyth 50k