Showing : brain • reset
1
vote
2
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1.9k
views
How to proceed with different degradation levels of RNA-seq samples?
degradation RNA-seq variability differential expression brain
updated 7.1 years ago by ★ 28k • written 7.1 years ago by ▴ 90
0
votes
1
reply
1.7k
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 13.1 years ago by ▴ 80 • written 13.1 years ago by ▴ 620
0
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1
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3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
0
votes
9
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2.6k
views
frma and alternative CDFs
GO cdf frma BRAIN GO cdf frma BRAIN
updated 9.8 years ago by ▴ 830 • written 9.8 years ago by ★ 13k
0
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0
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826
views
Re: NormalizeForPrintorder
BRAIN BRAIN
20.9 years ago Gordon Smyth 50k
0
votes
0
replies
822
views
Re: Additional questions regarding LIMMA
Normalization BRAIN Normalization BRAIN
20.9 years ago Gordon Smyth 50k
0
votes
0
replies
813
views
Re: LIMMA
Normalization BRAIN ASSIGN Normalization BRAIN ASSIGN
20.9 years ago Gordon Smyth 50k
0
votes
0
replies
837
views
Q-value package now available
BRAIN BRAIN
20.4 years ago Warnes, Gregory R ▴ 460
0
votes
0
replies
725
views
Overriding maPrintTip method
BRAIN BRAIN
20.2 years ago Kellie J. Archer, Ph.D. ▴ 120
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0
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1.5k
views
New Alzheimer's disease microarray data set available
Microarray BRAIN Microarray BRAIN
19.8 years ago Eric Blalock ▴ 250
0
votes
3
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1.4k
views
human tissue specific genes
BRAIN BRAIN
updated 19.7 years ago by 21k • written 19.7 years ago by ▴ 80
0
votes
0
replies
882
views
help with limma contrast matrix
BRAIN BRAIN
19.5 years ago Kimpel, Mark W ▴ 890
0
votes
1
reply
1.3k
views
Cluster analysis distance measuer
Microarray Annotation Normalization Clustering Cancer affy limma AnnBuilder BRAIN Cancer
updated 19.5 years ago by ▴ 110 • written 19.5 years ago by ▴ 250
0
votes
3
replies
1.0k
views
limma design matrix
affy BRAIN affy BRAIN
updated 19.3 years ago by ▴ 720 • written 19.3 years ago by ▴ 250
0
votes
3
replies
1.4k
views
LIMMA lmscFit: difference between linear models
BRAIN BRAIN
18.6 years ago Koen Bossers ▴ 20
0
votes
1
reply
1.1k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.3 years ago by ★ 2.0k • written 18.3 years ago by ▴ 20
0
votes
0
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934
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.6 years ago k. brand ▴ 420
0
votes
4
replies
1.5k
views
microarray analysis of a dose response * strain experiment
affy DOSE BRAIN affy DOSE BRAIN
updated 17.5 years ago by 21k • written 17.5 years ago by ▴ 890
0
votes
0
replies
1.2k
views
microarray analysis of a dose response * strain experiment
Microarray affy limma maSigPro DOSE BRAIN Microarray affy limma maSigPro DOSE BRAIN
17.5 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
773
views
read.maimages broken (limma 2.9.10)?
BRAIN BRAIN
17.2 years ago Koen Bossers ▴ 10
0
votes
0
replies
772
views
read.maimages broken (limma 2.9.10)?
limma BRAIN limma BRAIN
17.2 years ago Gordon Smyth 50k
0
votes
0
replies
1.0k
views
Undergraduate Student Project Summer 2007, at EBI: the synapse and the brain
Pathways BRAIN Pathways BRAIN
17.2 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
826
views
The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
16.8 years ago Neddy ▴ 10
0
votes
2
replies
1.5k
views
new topGO results using GO.db very different from old ones using GO
GO annotate topGO BRAIN GO annotate topGO BRAIN
updated 16.0 years ago by ▴ 400 • written 16.0 years ago by ▴ 730
0
votes
1
reply
1.1k
views
new lumi and miRNA array data
Microarray Normalization lumi BRAIN Microarray Normalization lumi BRAIN
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 830
0
votes
3
replies
1.3k
views
How to filter a list of SNPs?
BRAIN BRAIN
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 450
0
votes
5
replies
1.3k
views
P-values for tissue specific genes
BRAIN BRAIN
15.8 years ago Pascal Gellert ▴ 30
0
votes
0
replies
752
views
MAQC samples on Affymarix Exon array
BRAIN BRAIN
15.7 years ago Weiyin Zhou ▴ 20
0
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4
replies
1.7k
views
allen brain atlas
Genetics Annotation BRAIN Genetics Annotation BRAIN
updated 15.7 years ago by 25k • written 15.7 years ago by ▴ 60
0
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1
reply
1.3k
views
Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.2 years ago by 50k • written 15.4 years ago by ▴ 10
0
votes
0
replies
799
views
Creating a model matrix for three age groups using two-colour arrays
Microarray limma BRAIN Microarray limma BRAIN
15.4 years ago Gordon Smyth 50k
0
votes
0
replies
763
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Dmitriy Verkhoturov ▴ 10
0
votes
0
replies
788
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
15.2 years ago Gordon Smyth 50k
0
votes
3
replies
1.2k
views
Microarray experiments with Drosophilas (miniscule amounts of RNA, cheap organisms)
Microarray BRAIN Microarray BRAIN
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ▴ 40
0
votes
0
replies
983
views
Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
13.4 years ago Pan Du ★ 1.2k
0
votes
0
replies
770
views
How to: design matrices for multi organism parts experiment
Organism BRAIN Organism BRAIN
12.9 years ago Hans ▴ 10
0
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2
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1.2k
views
EBS volumes with the Bioconductor AMI: how to change default behaviour
BRAIN BRAIN
12.7 years ago Quin Wills ▴ 80
0
votes
7
replies
1.6k
views
EBS volumes with the Bioconductor AMI: how to change default behaviour
PROcess BRAIN PROcess BRAIN
12.7 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
922
views
[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 150 • written 12.6 years ago by ▴ 30
0
votes
1
reply
1.2k
views
[question] integration of microarray data from different sources in limma package
Microarray limma BRAIN Microarray limma BRAIN
updated 12.6 years ago by ▴ 340 • written 12.6 years ago by ▴ 30
0
votes
0
replies
878
views
What is the difference of layout between genepix scanner & agilent scanner
limma BRAIN limma BRAIN
12.5 years ago 이선재 ▴ 30
0
votes
1
reply
1.2k
views
Three tenure track assistant professorship openings at Inst. Behavioral Genetics, University of Colorado Boulder
Genetics BRAIN Genetics BRAIN
12.1 years ago Matthew Keller ▴ 100
0
votes
0
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
11.8 years ago alessandro.guffanti@genomnia.com ▴ 330
0
votes
3
replies
1.2k
views
edgeR and tagwise dispersion: overcorrection for multiple tests?
SAGE Regression edgeR BRAIN SAGE Regression edgeR BRAIN
updated 11.8 years ago by 25k • written 11.8 years ago by 50k
0
votes
1
reply
1.2k
views
log2 and rowMeans a problem?
BRAIN BRAIN
updated 11.4 years ago by ★ 4.3k • written 11.5 years ago by ▴ 20
0
votes
0
replies
744
views
Differentially regulated genes
BRAIN BRAIN
11.2 years ago Ali Mohammadian ▴ 290
0
votes
0
replies
923
views
Error in example from biomaRt vignette
biomaRt BRAIN biomaRt BRAIN
11.0 years ago Steffen Durinck ▴ 90
0
votes
0
replies
1.9k
views
Tukey\'s HSD after ANOVA
GO BRAIN GO BRAIN
11.0 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.8 years ago _Bio - Informatics ▴ 20
0
votes
0
replies
1.4k
views
Job reminder: Open position for a Core Bioinformatician in Lund, Sweden
Microarray BRAIN Microarray BRAIN
10.8 years ago _Bio - Informatics ▴ 20
50 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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