Bioconductor Bugs

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1.8k

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bugs limma

2.1 years ago Zhenyu • 0

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1.8k

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arrayexpress affy bugs

updated 6.6 years ago by James W. MacDonald 67k • written 6.6 years ago by Ed Siefker ▴ 230

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2.7k

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GSVA bug gsva bugs

updated 7.0 years ago by Robert Castelo ★ 3.4k • written 7.0 years ago by JasonL_Weirather ▴ 10

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1.2k

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DiffBind bugs

updated 7.4 years ago by Rory Stark ★ 5.2k • written 7.4 years ago by jeremydt • 0

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1.6k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by wcstcyx ▴ 30

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1.4k

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annotationhub bugs encode bed

7.9 years ago • updated 7.8 years ago wcstcyx ▴ 30

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1.2k

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bugs impute

8.1 years ago Shicheng Guo • 0

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1.8k

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software error bugs deseq2

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by john.hu • 0

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1.6k

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monocle bugs

8.9 years ago wanghao1993333 • 0

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1.8k

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ggbio bugs tracks autoplot

9.7 years ago cooketho • 0

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1.6k

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arrayqualitymetrics bugs error

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by daugherty_a • 0

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2.2k

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Bugs deseq2

updated 10.1 years ago by Michael Love 42k • written 10.1 years ago by lmf.bill@gmail.com ▴ 10

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1.5k

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Bugs ggbio

10.1 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

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Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k

Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…

Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Votes

Answer: Are transformed values from rlog /vst log2 normalized counts?

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable

Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical

Awards • All

Scholar to James W. MacDonald 67k