Bioconductor Bugs

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1.8k

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bugs limma

2.1 years ago Zhenyu • 0

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1.8k

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arrayexpress affy bugs

updated 6.6 years ago by James W. MacDonald 67k • written 6.6 years ago by Ed Siefker ▴ 230

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2.7k

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GSVA bug gsva bugs

updated 7.0 years ago by Robert Castelo ★ 3.4k • written 7.0 years ago by JasonL_Weirather ▴ 10

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1.2k

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DiffBind bugs

updated 7.4 years ago by Rory Stark ★ 5.2k • written 7.4 years ago by jeremydt • 0

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1.6k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by wcstcyx ▴ 30

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1.4k

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annotationhub bugs encode bed

7.8 years ago wcstcyx ▴ 30

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1.2k

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bugs impute

8.1 years ago Shicheng Guo • 0

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1.8k

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software error bugs deseq2

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by john.hu • 0

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1.6k

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monocle bugs

8.9 years ago wanghao1993333 • 0

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1.8k

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ggbio bugs tracks autoplot

9.7 years ago cooketho • 0

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1.6k

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arrayqualitymetrics bugs error

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by daugherty_a • 0

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2.2k

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Bugs deseq2

updated 10.1 years ago by Michael Love 42k • written 10.1 years ago by lmf.bill@gmail.com ▴ 10

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1.5k

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Bugs ggbio

10.1 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA by Robert Castelo ★ 3.4k

Thanks for your analysis of the differences between ssGSEA 2.0 and ssGSEA 1.0, as I said in my previous message, please file an issue in th…

Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA by Bob ▴ 10

Thanks for the prompt answer! I looked into the "original ssGSEA R-implementation" ([https://github.com/GSEA-MSigDB/ssGSEA-gpmodule][1]), u…

Comment: RNASeq Time Course Question by jihoon.kim.1495 ▴ 10

I see. You'd mean clustering using only the right 5 columns (in the above example), right?

Comment: RNASeq Time Course Question by Michael Love 42k

Yes. If you wanted to focus on differences, you could cluster on the subset of coefficients representing differences (interactions).

Comment: RNASeq Time Course Question by jihoon.kim.1495 ▴ 10

Thanks for the clarification. With regards to your last comment about the clustering by the coefficients/log2fold changes, I wanted to cl…

Votes

C: Vertical line at A=0, nothing else, on MA plot

Comment: RNASeq Time Course Question

Answer: RNASeq Time Course Question

Comment: limma plotMDS - logFC inverted?

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

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