Showing : cancer • reset
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752
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BioC2012: upcoming deadlines
Cancer Cancer
13.6 years ago Martin Morgan 25k
0
votes
2
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960
views
[ChIPpeakAnno] Can not start ChIPpeakAnno after update to version 2.5.9
GO Cancer GO Cancer
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by 25k
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3
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3.3k
views
Is it possible to read in Bluefuse and Agilent files together using read.maimages() function in limma?
Cancer Cancer
updated 13.6 years ago by 53k • written 13.6 years ago by ▴ 40
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1
reply
4.3k
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samtools error
Cancer convert Cancer convert
updated 13.6 years ago by ▴ 330 • written 13.6 years ago by ▴ 390
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1
reply
916
views
how to load RangedData for all chromosomes in one tab in UCSC browser using browserView from rtracklayer
GO Cancer rtracklayer GO Cancer rtracklayer
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 370
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0
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1.4k
views
build/check reports for ENVISIONQuery, IdMappingRetrieval on OSX
Cancer RWebServices SJava CoGAPS CRImage Rsubread Cancer RWebServices SJava CoGAPS
13.6 years ago Day, Roger S ▴ 60
0
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0
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1.1k
views
aCGH package. Plots: X axis label problems
aCGH Cancer aCGH aCGH Cancer aCGH
13.6 years ago Sarah JugurnauthLittle ▴ 20
0
votes
13
replies
2.8k
views
PWMscoreStartingAt and ambiguous subject seqs
Cancer Biostrings GLAD Cancer Biostrings GLAD
updated 13.6 years ago by 16k • written 13.6 years ago by ▴ 740
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0
replies
1.0k
views
ChIPpeakAnno annotatePeakInBatch
Cancer Cancer
13.6 years ago Julie Zhu ★ 4.3k
0
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9
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2.5k
views
necessity of moderated t statistic and false discoveries for small predefined gene list?
Cancer affy limma Cancer affy limma
updated 13.6 years ago by ▴ 260 • written 13.6 years ago by ★ 2.0k
0
votes
1
reply
910
views
BSgenome packages for ce10 and panTro3 (was Re: BSgenome.Celegans.UCSC.cd10 for WS220)
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by 16k
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2
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1.2k
views
question about BSgenome and C.pombe genome, absent in USCS
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 13.7 years ago by ▴ 30 • written 13.7 years ago by 16k
0
votes
2
replies
1.3k
views
FW: miRNA annotation
miRNA Annotation GO Cancer miRNA Annotation GO Cancer
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 70
0
votes
2
replies
1.2k
views
Re-send directly to BioC on miRNA annoation
miRNA Annotation Cancer miRNA Annotation Cancer
updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 70
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0
replies
1.2k
views
Question regarding MADE4 graphs
Cancer made4 Cancer made4
13.7 years ago Aedin Culhane ▴ 510
0
votes
1
reply
2.0k
views
Copy Number Analysis across multiple SNP array plaforms
SNP Cancer crlmm ffpe SNP Cancer crlmm ffpe
updated 13.7 years ago by ▴ 210 • written 13.7 years ago by ▴ 20
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votes
0
replies
1.2k
views
Help strange GSEA error
Cancer Cancer
13.7 years ago Martin Morgan 25k
0
votes
0
replies
684
views
combining hgu133a and hgu133b
Cancer cdf Cancer cdf
13.7 years ago Steve Lianoglou ★ 13k
0
votes
4
replies
4.4k
views
supervised & unsupervised analysis of samples of microarray data
Cancer Cancer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 200
0
votes
0
replies
924
views
DESeq error thrown during estimateDispersions w/ coxReid method
Cancer DEXSeq Cancer DEXSeq
13.7 years ago Steve Lianoglou ★ 13k
0
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1
reply
1.7k
views
FW: Overlay Gene Expression on SNP (copy number) data
SNP Coverage Network Cancer TranscriptDb IRanges RCytoscape ggbio Gviz SNP Coverage
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 370
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votes
1
reply
2.0k
views
Some particulars about rtracklayer::liftOver
Cancer rtracklayer Cancer rtracklayer
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ★ 13k
0
votes
3
replies
1.8k
views
Gene-gene interaction analysis
Cancer Cancer
updated 13.7 years ago by ▴ 420 • written 13.7 years ago by ▴ 130
0
votes
7
replies
1.7k
views
distanceToNearest for GRanges?
Cancer GenomicRanges Cancer GenomicRanges
updated 13.7 years ago by ▴ 420 • written 13.7 years ago by ★ 6.8k
0
votes
2
replies
2.0k
views
Calculating alignment scores from aligned sequences
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 13.7 years ago by ★ 11k • written 13.7 years ago by ★ 13k
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3
replies
1.3k
views
Parallelizing Biostrings::pairwiseAlignment locally with multicore::mclapply problems?
Cancer Cancer
13.7 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.7k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt genomes Cancer Organism biomaRt genomes
13.7 years ago Malcolm Cook ★ 1.6k
0
votes
1
reply
1.1k
views
Question about using lumi package
Cancer lumi Cancer lumi
updated 13.7 years ago by ▴ 440 • written 13.7 years ago by ▴ 10
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0
replies
1.3k
views
Bioconductor Digest, Vol 110, Issue 11
Normalization Cancer lumi methylumi Normalization Cancer lumi methylumi
13.7 years ago Pan Du ▴ 440
0
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1
reply
1.9k
views
Errors for estimateGLMTrendedDisp and estimateGLMCommonDisp functions in the edgeR package
Cancer edgeR Cancer edgeR
updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 40
0
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1
reply
1.3k
views
Course: R / Bioconductor for High-Throughput Sequence Analysis
Annotation Cancer genomes Annotation Cancer genomes
13.7 years ago Martin Morgan 25k
0
votes
0
replies
915
views
oligonucleotideTransitions from Biostrings package
Cancer Biostrings Cancer Biostrings
13.8 years ago Hervé Pagès 16k
1
vote
3
replies
1.4k
views
distanceToNearest for GRanges?
Cancer Cancer
updated 13.8 years ago by ★ 1.6k • written 13.8 years ago by ▴ 740
0
votes
8
replies
2.4k
views
Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
13.8 years ago Rosalind Cutts ▴ 20
0
votes
0
replies
1.5k
views
JOB: Research Associate in Statistical Epigenomics (London)
Cancer Ovarian PROcess Cancer Ovarian PROcess
13.8 years ago Andrew Teschendorff ▴ 60
0
votes
6
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2.0k
views
[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures genomes Cancer Organism biomaRt GenomicFeatures
updated 13.8 years ago by ▴ 660 • written 13.8 years ago by 16k
0
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0
replies
1.5k
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings Category BSgenome rtracklayer GO
13.8 years ago Matthew Young ▴ 50
0
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0
replies
1.2k
views
post-doctoral position
Cancer Cancer
13.8 years ago Day, Roger S ▴ 60
0
votes
1
reply
918
views
Intersecting two chromosomal ranges but keeping the unique ones
Cancer Cancer
updated 13.8 years ago by ▴ 130 • written 13.8 years ago by ★ 13k
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votes
5
replies
1.4k
views
A few Q's on using DEXSeq with mucho data
Cancer DEXSeq Cancer DEXSeq
updated 13.8 years ago by ★ 3.8k • written 13.8 years ago by ★ 13k
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3
replies
1.9k
views
homopolymer gap extension penalty in Biostrings
Sequencing Alignment GO Cancer Sequencing Alignment GO Cancer
updated 13.8 years ago by ▴ 10 • written 13.8 years ago by 16k
0
votes
0
replies
873
views
report a possible bug of
Cancer ShortRead Cancer ShortRead
13.8 years ago Martin Morgan 25k
0
votes
1
reply
1.1k
views
countOverlaps within Mode Counting
Cancer Cancer
updated 13.8 years ago by ★ 1.6k • written 13.8 years ago by ★ 6.8k
0
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0
replies
1.2k
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
13.8 years ago Voke AO ▴ 760
0
votes
3
replies
6.5k
views
how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 3.5 years ago by • 0 • written 13.8 years ago by ★ 7.2k
0
votes
0
replies
1.0k
views
cutoff for NUSE plot in oligo
Cancer Cancer
13.8 years ago Richard Friedman ★ 2.0k
0
votes
0
replies
765
views
adding factors to a data frame from a dataframe
GO Cancer GO Cancer
13.8 years ago Tom Keller ▴ 70
0
votes
0
replies
1.5k
views
Updated affy package? ReadAffy/ AffyBatch has changed and breaks my pipeline!
Cancer cdf probe affy gcrma AnnotationDbi Cancer cdf probe affy gcrma AnnotationDbi
13.9 years ago Benjamin Otto ▴ 830
0
votes
0
replies
1.1k
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings BSgenome rtracklayer goseq GO
13.9 years ago Alicia Oshlack ▴ 100
0
votes
0
replies
1.0k
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer BSgenome Biostrings BSgenome rtracklayer GenomicFeatures goseq GO
13.9 years ago Hervé Pagès 16k
1,555 results • Page 9 of 32
Recent ...
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Answer: Guitar R package requires update due to dependency GenomicFeatures by Kevin Blighe ★ 4.0k
Greetings, This issue is indeed caused by recent changes in the Bioconductor 3.20+ release cycle. The function makeTxDbFromGFF() was previ…
Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: Clarification on counting in Rsubread (featureCounts) by Kevin Blighe ★ 4.0k
Dear Luca, This is a very plausible behavior caused by **read assignment ambiguity** due to **overlapping gene coordinates** (specifical…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Votes
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Answer: Limma-voom sample weights and impact on DEG numbers
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Teacher to Gordon Smyth 53k
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