Showing : cancer • reset
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Job openings: Staff Scientist - Computational Biology and Bioinformatics - Massachusetts General Hospital
Sequencing Cancer Sequencing Cancer
13.9 years ago Wittner, Ben ▴ 290
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Deferential gene expression databases
Microarray Genetics Annotation Normalization Pathways GO Cancer BSgenome probe annotate
13.9 years ago saikouy bah ▴ 30
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Compensating using spillover function of flowCore
Cancer flowCore Cancer flowCore
13.9 years ago Greg Finak ▴ 240
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gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
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DeSeq vs current version of Cuffdiff
Sequencing Bayesian Cancer DESeq Sequencing Bayesian Cancer DESeq
updated 13.9 years ago by ▴ 290 • written 13.9 years ago by ★ 2.0k
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Open Position :: Postdoc in systems genetics in Cambridge
Transcription Genetics Visualization Network Cancer Breast Lung Transcription Genetics
13.9 years ago Florian Markowetz ▴ 20
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GenomicFeatures::makeTranscriptDbFromGTF?
Cancer GenomicFeatures Cancer GenomicFeatures
updated 13.9 years ago by ★ 11k • written 13.9 years ago by ★ 13k
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RE : maping SNPs
SNP Annotation Cancer SNPlocs TranscriptDb GenomicFeatures GenomicRanges SNP Annotation
updated 13.9 years ago by 16k • written 13.9 years ago by ▴ 450
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[Hinxton #251937] RE: GenomicFeatures::makeTranscriptDbFromBiomart - BioMart data anomaly: for some transcripts, the cds cumulative length inferred f…
Cancer Organism biomaRt GenomicFeatures Cancer Organism biomaRt GenomicFeatures
updated 13.9 years ago by ▴ 660 • written 13.9 years ago by ★ 1.6k
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Genomicfeatures chromosome names matching
Cancer TranscriptDb convert Cancer TranscriptDb convert
13.9 years ago Hervé Pagès 16k
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857
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narrow on GappedAlignments fails with error
Cancer GenomicRanges Cancer GenomicRanges
13.9 years ago Hervé Pagès 16k
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[course] CSAMA 2012: Computational Statistics for Genome Biology (Tenth Edition)
Microarray Annotation Cancer Microarray Annotation Cancer
13.9 years ago stefano iacus ▴ 430
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Error with GAGE
Cancer Cancer
updated 13.9 years ago by ★ 1.6k • written 13.9 years ago by 25k
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FW: URGENT Help required: Getting this error with GAGE analysis, input files attached
Microarray Annotation Pathways GO Cancer Breast cycle gage Microarray Annotation GO
updated 13.9 years ago by ▴ 200 • written 13.9 years ago by 25k
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2 color microarray and decidetests output
Cancer limma Cancer limma
14.0 years ago Srikanth Manda Srinivas ▴ 200
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2 color microarray decidetests Output
Cancer limma Cancer limma
14.0 years ago Srinivas Srikanth ▴ 70
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shift function (GenomicRanges, IRanges), issue with negative start values and circular DNA
Cancer Cancer
updated 14.0 years ago by ▴ 100 • written 14.0 years ago by 16k
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Workshop, Feb 27/28: Advanced R / Bioconductor Workshop on High-Throughput Genetic Analysis
Cancer Cancer
14.0 years ago Martin Morgan 25k
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How to prepare Custom INPUT(DATA) files for GAGE Analysis and DO a BASIC GAGE analysis using those files
Microarray GO Cancer Breast gage Microarray GO Cancer Breast gage
updated 14.0 years ago by ▴ 200 • written 14.0 years ago by ★ 6.8k
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[R-sig-hpc] About Multicore: mclapply
GO Cancer GO Cancer
14.0 years ago Martin Morgan 25k
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RMA normalisation of test microarray data to training data
Microarray GO Cancer affy Microarray GO Cancer affy
updated 14.0 years ago by 68k • written 14.0 years ago by ★ 1.9k
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limma: adding weights to mroast
Cancer limma Cancer limma
14.0 years ago Gordon Smyth 53k
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installation of Rsamtools
GO Cancer Rsamtools GO Cancer Rsamtools
14.0 years ago Steve Lianoglou ★ 13k
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lumiHumanAll.db - wrong information in lumiHumanAllCHR for some probes?
Cancer probe Cancer probe
updated 14.0 years ago by 6.7k • written 14.0 years ago by ▴ 740
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Fwd: the diffrent alignment result between pairwiseAlignment() in Biostrings package and EBI-webserver
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 14.0 years ago by ★ 6.8k • written 14.0 years ago by ▴ 50
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limma: adding weights to mroast
Cancer limma Cancer limma
14.0 years ago Anthoula Gaigneaux ▴ 20
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Announcement: NCI Second Symposium on Translational Genomics
Sequencing Cancer Sequencing Cancer
14.0 years ago Sean Davis 21k
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Minimal region of overlap between two GRanges objects
Cancer Cancer
updated 14.1 years ago by 25k • written 14.1 years ago by ★ 1.9k
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Background correction with neqc
Normalization Cancer Normalization Cancer
updated 2.2 years ago by 53k • written 14.1 years ago by ★ 13k
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intragenic sequence extraction
Annotation Cancer Organism BSgenome BSgenome GenomicFeatures Annotation Cancer Organism
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 90
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arrayQualityMetrics: expression or probe-level data?
Cancer gcrma Cancer gcrma
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 20
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Bioconductor Employment: Statistical Research Associate
DNASeq Cancer DNASeq Cancer
14.1 years ago Martin Morgan 25k
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858
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GSVA error when trying to bootstrap
Cancer Cancer
14.1 years ago Justin Guinney ▴ 10
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1.8k
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RE : RE : rsamtools installation
Cancer Biostrings IRanges Rsamtools BiocInstaller Cancer Biostrings IRanges Rsamtools
updated 14.1 years ago by ▴ 140 • written 14.1 years ago by 25k
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PhD position available in Innsbruck, Austria
Transcription Microarray Cancer Leukemia Transcription Microarray Cancer Leukemia
14.1 years ago Johannes Rainer ▴ 80
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Fwd: extract introns
Cancer Organism BSgenome BSgenome Cancer Organism BSgenome BSgenome
14.2 years ago Steve Lianoglou ★ 13k
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objective criterion for identification of outlying arrays by pca
Network Bayesian Cancer Network Bayesian Cancer
14.2 years ago shirley zhang ★ 1.0k
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1.8k
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Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 14.2 years ago by ★ 11k • written 14.2 years ago by ★ 1.0k
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Bioinformatics/biostatistics position at the Institute of Cancer Research, UK
Sequencing Microarray Genetics Cancer Sequencing Microarray Genetics Cancer
14.2 years ago Daniel Brewer ★ 1.9k
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1.4k
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goSeq error
Cancer PROcess edgeR goseq ASSIGN Cancer PROcess edgeR goseq ASSIGN
14.2 years ago Matthew Young ▴ 50
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10
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2.5k
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objective criterion for identification of outlying arrays by pca
Bayesian Cancer Bayesian Cancer
updated 14.2 years ago by 6.7k • written 14.2 years ago by ★ 2.0k
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Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Cancer convert Cancer convert
14.2 years ago Chao-Jen Wong ▴ 580
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3
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1.6k
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Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian Cancer oligo Bayesian Cancer oligo
updated 14.2 years ago by ★ 4.2k • written 14.2 years ago by ★ 2.0k
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NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian Cancer oligo Bayesian Cancer oligo
14.2 years ago Richard Friedman ★ 2.0k
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Computational biologist positions at the PICR
Proteomics Cancer Proteomics Cancer
14.2 years ago Crispin Miller ★ 1.1k
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1.2k
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Computational Biologist position available in Screening Unit in Milan, Italy
Cancer Cancer
14.2 years ago mattia pelizzola ▴ 200
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926
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Statistical programmer position at FHCRC
Cancer Cancer
14.2 years ago Greg Finak ▴ 240
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0
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858
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BSgenome package for sacCer3
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
14.2 years ago Hervé Pagès 16k
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1.5k
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[Job] Functional genomic analysis of cancer/RNAi screening
Transcription Sequencing Genetics Pathways Cancer Prostate Transcription Sequencing Cancer
14.2 years ago Sean Davis 21k
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1.6k
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Bioinformatics course - October 2011 Registration is now open
Microarray Cancer biomaRt ArrayExpress genomes SANTA Microarray Cancer biomaRt genomes
14.2 years ago Claude Chelala ▴ 40
1,555 results • Page 10 of 32
Recent ...
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For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
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Awards • All
Popular Question to ZheFrench ▴ 60
Teacher to Gordon Smyth 53k
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Popular Question to Vincent J. Carey, Jr. 6.7k
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