Showing : cdf • reset
0
votes
4
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1.5k
views
gcrma background correction
cdf gcrma matchprobes cdf gcrma matchprobes
updated 18.9 years ago by ★ 6.5k • written 18.9 years ago by ▴ 170
0
votes
0
replies
689
views
Trouble with gcrma background correction
cdf gcrma cdf gcrma
18.9 years ago Hervé Pagès 16k
0
votes
10
replies
2.6k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 18.9 years ago by ▴ 460 • written 18.9 years ago by ▴ 70
0
votes
12
replies
2.7k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 18.9 years ago by ★ 5.5k • written 18.9 years ago by ▴ 460
0
votes
2
replies
1.1k
views
trouble with gcrma: bgcorrection
cdf gcrma cdf gcrma
updated 18.9 years ago by ▴ 200 • written 18.9 years ago by ▴ 170
0
votes
2
replies
3.4k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 18.9 years ago by ★ 7.4k • written 19.0 years ago by ▴ 360
0
votes
5
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2.2k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 890
0
votes
0
replies
1.3k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
19.0 years ago Kimpel, Mark W ▴ 890
0
votes
1
reply
1.5k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 19.0 years ago by 68k • written 19.0 years ago by ★ 2.2k
0
votes
5
replies
2.2k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 19.0 years ago by ▴ 20 • written 19.0 years ago by ★ 2.2k
0
votes
0
replies
1.1k
views
bugfix in affxparser for BioC release 1.9
cdf affxparser cdf affxparser
19.0 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
1.4k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
19.0 years ago Martin Morgan 25k
0
votes
4
replies
1.6k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 19.0 years ago by 25k • written 19.0 years ago by ★ 2.2k
0
votes
2
replies
1.0k
views
Bioconductor Digest, Vol 44, Issue 28
cdf cdf
updated 19.0 years ago by ★ 2.2k • written 19.0 years ago by ▴ 200
0
votes
1
reply
832
views
Create a vector of individual probes to remove from a CDF file
cdf cdf
updated 19.0 years ago by ★ 2.2k • written 19.0 years ago by ▴ 20
0
votes
7
replies
2.1k
views
Assistance: mouse4302cdf installation
cdf affy cdf affy
updated 19.0 years ago by ▴ 10 • written 19.0 years ago by ▴ 20
0
votes
0
replies
661
views
FW: create probe file from CDF?
Genetics Cancer cdf probe gcrma Genetics Cancer cdf probe gcrma
19.1 years ago Lo, Ken ▴ 50
0
votes
1
reply
1.2k
views
Affymetrix exon arrays?
Normalization Cancer Breast cdf affy PROcess Normalization Cancer Breast cdf affy
updated 19.1 years ago by ▴ 20 • written 19.1 years ago by ▴ 310
0
votes
0
replies
1.5k
views
annotation data packages in BioC1.9
Annotation adme16cod ath1121501 h10kcod h20kcod hi16cod hs25kresogen hwgcod m10kcod cdf
19.1 years ago Nianhua Li ▴ 870
0
votes
3
replies
2.4k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 350
0
votes
0
replies
625
views
CDF and annotation package for populus
Microarray GUI cdf affy Microarray GUI cdf affy
19.1 years ago 丁明全 ▴ 10
0
votes
2
replies
1.1k
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 20
0
votes
2
replies
1.3k
views
normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 19.1 years ago by ★ 6.5k • written 19.1 years ago by ▴ 420
0
votes
1
reply
947
views
cdf for ATH1 array
cdf gcrma cdf gcrma
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 10
0
votes
5
replies
2.0k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
19.2 years ago Wu, Xiwei ▴ 350
0
votes
1
reply
1.3k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 20
0
votes
1
reply
760
views
Affy High Throughput arrays
cdf probe affy gcrma cdf probe affy gcrma
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 10
0
votes
2
replies
2.9k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 19.2 years ago by ▴ 120 • written 19.2 years ago by ▴ 340
0
votes
2
replies
1.2k
views
RLMM questions
GO Classification cdf affy RLMM GO Classification cdf affy RLMM
updated 19.2 years ago by ★ 2.4k • written 19.2 years ago by ▴ 20
0
votes
2
replies
1.4k
views
error with GOHyperG
drosophila2 cdf Biobase annotate genefilter multtest RBGL GOstats drosophila2 cdf RBGL
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 10
0
votes
5
replies
2.3k
views
RMA and justRMA error
Cancer cdf Biobase affy gcrma affyio Cancer cdf Biobase affy gcrma affyio
19.2 years ago Aedin Culhane ▴ 510
0
votes
2
replies
828
views
combineAffyBatch problem
cdf affy matchprobes cdf affy matchprobes
updated 19.2 years ago by ★ 13k • written 19.3 years ago by ▴ 10
0
votes
2
replies
1.0k
views
Affymetrix exon arrays?
cdf PROcess cdf PROcess
updated 19.3 years ago by ★ 2.4k • written 19.3 years ago by ▴ 20
0
votes
0
replies
1.3k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
19.3 years ago Todd Nick ▴ 10
0
votes
0
replies
899
views
error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
19.3 years ago Levi Waldron ▴ 30
0
votes
1
reply
749
views
poplarcdf uninstallable
cdf affy cdf affy
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 30
0
votes
0
replies
900
views
chickencdf in qcEnv
cdf cdf
19.3 years ago Lina Hultin-Rosenberg ▴ 180
0
votes
1
reply
1.3k
views
qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 160
0
votes
0
replies
775
views
promotor tilingArray
cdf probe cdf probe
19.3 years ago Ron Ophir ▴ 270
0
votes
1
reply
884
views
Make a cdf package for unconventional Affymetrix chips
Microarray cdf affy Microarray cdf affy
updated 19.3 years ago by ★ 6.5k • written 19.3 years ago by ▴ 10
0
votes
0
replies
903
views
combined Affybatch and mas5
hgu133a cdf affy matchprobes hgu133a cdf affy matchprobes
19.4 years ago Lewin Eisele ▴ 10
0
votes
2
replies
1.5k
views
median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 19.4 years ago by ★ 1.2k • written 19.4 years ago by ▴ 270
0
votes
8
replies
2.5k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 520
0
votes
0
replies
886
views
justGCRMA error in BioC 1.8
Microarray cdf affy gcrma matchprobes Microarray cdf affy gcrma matchprobes
19.4 years ago James W. MacDonald 68k
0
votes
3
replies
1.1k
views
CDF environment for a custom Affy chip
cdf affy cdf affy
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.5 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
1.0k
views
simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
19.5 years ago Wittner, Ben ▴ 290
0
votes
0
replies
992
views
alternative CDF (Tarca, Adi)
qPCR cdf probe affy qPCR cdf probe affy
19.5 years ago raffaele calogero ▴ 500
0
votes
0
replies
767
views
alternative CDF
hgu133a hgu133plus2 cdf hgu133a hgu133plus2 cdf
19.5 years ago Tarca, Adi ▴ 570
0
votes
4
replies
1.7k
views
probe --> probe set mapping in CDF library files
cdf probe altcdfenvs cdf probe altcdfenvs
19.5 years ago michael driscoll ▴ 30
927 results • Page 12 of 19
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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