Showing : cdf • reset
0
votes
3
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1.4k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 18.4 years ago by ▴ 200 • written 18.4 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Affy Human Gene ST1.0 cdf
Annotation cdf Annotation cdf
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 500
0
votes
0
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1.1k
views
Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
18.4 years ago lidaof ▴ 450
0
votes
3
replies
1.7k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 450
0
votes
0
replies
1.2k
views
Normalization of 2 color Nimblegen array
cdf affy affyPLM convert oligo makePlatformDesign cdf affy affyPLM convert oligo
18.4 years ago dhruv pant ▴ 30
0
votes
6
replies
1.5k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 18.4 years ago by 68k • written 18.4 years ago by ★ 1.3k
0
votes
3
replies
2.1k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
18.4 years ago Salim Charaniya ▴ 20
0
votes
0
replies
1.0k
views
problem with hyperGTest function
GO Cancer cdf GOstats GO Cancer cdf GOstats
18.4 years ago Seth Falcon ★ 7.4k
0
votes
3
replies
1.4k
views
Affy normalization with custom chip.
cdf affy cdf affy
updated 18.4 years ago by ★ 2.2k • written 18.4 years ago by ▴ 70
0
votes
2
replies
755
views
QCReport problem
cdf cdf
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 10
0
votes
9
replies
2.4k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 80
0
votes
6
replies
1.9k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 190
0
votes
0
replies
821
views
(no subject)
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
18.4 years ago David Ruau ▴ 190
0
votes
0
replies
1.1k
views
simpleaffy problem - drosophila2
drosophila2 cdf affy affydata simpleaffy drosophila2 cdf affy affydata simpleaffy
18.5 years ago Yihuan Xu ▴ 130
0
votes
9
replies
2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
0
votes
1
reply
1.2k
views
simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 18.5 years ago by ★ 1.1k • written 18.5 years ago by ▴ 510
0
votes
1
reply
929
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 18.5 years ago by 25k • written 18.5 years ago by ▴ 110
0
votes
2
replies
1.2k
views
Nimblegen data analysis
GO cdf affy oligo GO cdf affy oligo
updated 18.5 years ago by ▴ 140 • written 18.5 years ago by ★ 2.2k
0
votes
4
replies
2.3k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.5 years ago by ★ 1.2k • written 18.5 years ago by ▴ 30
0
votes
1
reply
1.4k
views
paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 18.5 years ago by ▴ 470 • written 18.5 years ago by 53k
0
votes
1
reply
1.2k
views
RMA error on exon arrays
Normalization Breast cdf probe PROcess Normalization Breast cdf probe PROcess
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 500
0
votes
1
reply
767
views
error getting CDF
cdf gcrma cdf gcrma
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 20
0
votes
5
replies
1.5k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 18.6 years ago by ★ 6.5k • written 18.6 years ago by ▴ 830
0
votes
3
replies
964
views
Affymetrix Tiling arrays
cdf cdf
18.6 years ago Alessandro Ferrantini ▴ 30
0
votes
0
replies
1.3k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.6 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
621
views
ANN:xy2i and i2xy to be deprecated
Microarray Cancer cdf affy Microarray Cancer cdf affy
18.6 years ago James W. MacDonald 68k
0
votes
1
reply
783
views
combineAffyBatch problem
cdf affy cdf affy
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ▴ 10
0
votes
1
reply
1.1k
views
weird problem with ReadAffy and makecdfenv'd CDF package
cdf cdf
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 160
0
votes
4
replies
1.6k
views
metadata for Affymetrix Poplar array
Annotation cdf Annotation cdf
updated 18.7 years ago by ▴ 870 • written 18.7 years ago by ★ 1.4k
0
votes
3
replies
1.7k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 18.7 years ago by ▴ 870 • written 18.7 years ago by ▴ 20
0
votes
1
reply
1.4k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 60
0
votes
3
replies
1.4k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.7 years ago by ★ 1.1k • written 18.7 years ago by ▴ 270
0
votes
0
replies
1.2k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.7 years ago Wu, Xiwei ▴ 350
0
votes
1
reply
1.4k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 300
0
votes
4
replies
1.8k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ▴ 830
0
votes
0
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1.2k
views
Analysis with MBNI re-mapped (custom) CDF files
Microarray Clustering cdf probe affy affyPLM mmgmos Microarray Clustering cdf probe
18.8 years ago Richard Pearson ▴ 390
0
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1
reply
1.5k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 320
0
votes
0
replies
890
views
Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
18.8 years ago Manhong Dai ▴ 200
0
votes
2
replies
1.1k
views
Loading multiple Affy chips simultaneously
GO cdf gcrma GO cdf gcrma
18.8 years ago Paul Boutros ▴ 340
0
votes
4
replies
1.9k
views
Problems with the size of the plots obtained with AffyPLM
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 18.8 years ago by ▴ 550 • written 18.8 years ago by ▴ 350
0
votes
0
replies
830
views
[Bioc] Removing outlier/masked probes and gcRMA
cdf affy gcrma cdf affy gcrma
18.8 years ago Amy Mikhail ▴ 460
0
votes
1
reply
904
views
Arabidopsis tiling arrays
cdf cdf
updated 18.8 years ago by ★ 4.3k • written 18.8 years ago by ▴ 10
0
votes
4
replies
1.6k
views
gcrma with bpmap file instead of cdf file
cdf gcrma cdf gcrma
18.8 years ago Baoqiang Cao ▴ 30
0
votes
2
replies
1.6k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ▴ 50
0
votes
0
replies
1.0k
views
Modified qc.affy code for chip type: soybeancdf
Cancer cdf Cancer cdf
18.8 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
0
replies
1.1k
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.9 years ago Charlyn Suarez ▴ 10
0
votes
2
replies
1.9k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 890
0
votes
3
replies
1.9k
views
ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 18.9 years ago by ★ 13k • written 18.9 years ago by ▴ 510
0
votes
4
replies
1.5k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.9 years ago by 25k • written 18.9 years ago by ★ 13k
0
votes
4
replies
1.3k
views
GCRMA with HG-U95A and HG-U95Av2
Normalization cdf gcrma Normalization cdf gcrma
updated 18.9 years ago by ★ 7.4k • written 18.9 years ago by ▴ 10
927 results • Page 11 of 19
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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